Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04072 ATGGATTCATTCCAACCAAACATAAATTCAGATACCTTTCAAGAATCCAATCACAAGAAACGCCGCAAAATCGCAAACCTAACAACCGATCAAAATTCCCTAAATCTCATGCCATGGAGATCTGAATCAGACCAAAATACCTACTCCAAAAAACTAATCGAAGCTCTCCGCCGGATAAATTCACCGGAAACAACCAAACCTAGAGTTGCCGGTCAAGTCCGTGAAACCGCCGATCGAGTTCTTGCTGCAACTGCTAAAGGAAGAACACGCTGGAGCCGCGCGATTCTTGGACGGTGGAAGAAGCTTCGTAGACATCACAGGAAAGTGAAGAAAGCGGGTAGTGGATTGAATCGAACGGGGATTGAAAGAGAGAGGATAAGACGGTTACCGGCGGTGCAGAAGAAAACACGCGTTCTAGGCCGGTTGGTTCCTGGTTGCCGGAAAGTTCCTTTACCGAATCTTCTAGAAGAAGCTACTGATTATATTTCTGCTTTGGAGATGCAAGTGCGTGCTATGACAACTGTCGCTGAGCTTCTTGCCGGTGGTACATCGGCGGGGATCGCCGGTCAGGTGTTGAGTTGA 582 0.4759 MDSFQPNINSDTFQESNHKKRRKIANLTTDQNSLNLMPWRSESDQNTYSKKLIEALRRINSPETTKPRVAGQVRETADRVLAATAKGRTRWSRAILGRWKKLRRHHRKVKKAGSGLNRTGIERERIRRLPAVQKKTRVLGRLVPGCRKVPLPNLLEEATDYISALEMQVRAMTTVAELLAGGTSAGIAGQVLS 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04072 193 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 41 179 IPR044660 GO:0006355
Trre2g04072 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 181 IPR036638 GO:0046983
Trre2g04072 193 MobiDBLite consensus disorder prediction 1 20 - -
Trre2g04072 193 CDD bHLH_AtIBH1_like 121 173 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04072 Trre-Chr2 48220184 48220765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04072 1 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 44.211 2.43e-38 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04072 - - gmx:100783462 235.728