Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04071 ATGGAAACAAAGACTATGGTTCCATCACTATCAGATACCAAACTCACCAATGTTGTTCTCTCCAACGGAAAACACTACTCTTCTCCTGATGACTTAGAGACCTTCTACCTCAAACTTACTGACTTGTTGGACTCCTCTGGCCTCACTCTCATTTTCAATGCCAGAGAAACATCCTTAGACTTGTACCTGTTTTACTTGGAGGTCACCAGAAGAGGAGGTTATCACCAGGTTGGTCAACAAAAGAAATGGGGTGAAGTTGTTTCAGCACTAAAACTTGAAGGCAACAATGTAAAGTTATGTGCTCAAGTTGAAAAGCTCTATGCACTTCTTTTATACAAATTCGAGAAATTGTACTTCTATAGGTTTCCTGCAACTCAAACTGCAACTGGCAGCACCAAAGTTACAAGGAAGGAGAACTCGACAACTAGTTTATCTCAATTAATGGATGATGGAGATTATCTGACGGCGGCAAGGCTATCCAAGGACTACCCTATCAAAAAACTGACAGCAATACCTCCTCCAGTGCTTCTACAAACACCCTCAAAAGACAAAGAAACGAAGAAACGGCGAGGTGCTCCAACGGGGAGAAGTGGATATCAAATATTTCTAAAGCAAGAATGTGCTCGATTAAAAGCTTGTTGCCAGGACATAGATGGCAAAACAATCCTACGCACGGCTGTAGAAGCATGGAACAAGATGTCCGACAATGATAAACAGCCATATGTGGAAGAAAGCAAGAAGATAAAGGAACAAAATAAAGAAGCAAAAATGATCATCGACAATAAGCAGAAGGAACAAAATAAGGAAGCAATTATCATTGACAATAAGAAGAAGAGCACTCAAGATCTTAAAAGGGATGAAAAGAGGCCTAATGTGTCTGGTGGTGACTACTACTGCGTAACTTCGCAACCTCTACCAAATGCAACAGTGGACTTAGCTCTTAAAATGACAGAAAAAACATCCAAGGATCCCTTCTTCCCAGTTGATTTGGATGCTTATCGTTCCGTAGATTTGCCATCTAGGGTATTTATGTAA 1035 0.4058 METKTMVPSLSDTKLTNVVLSNGKHYSSPDDLETFYLKLTDLLDSSGLTLIFNARETSLDLYLFYLEVTRRGGYHQVGQQKKWGEVVSALKLEGNNVKLCAQVEKLYALLLYKFEKLYFYRFPATQTATGSTKVTRKENSTTSLSQLMDDGDYLTAARLSKDYPIKKLTAIPPPVLLQTPSKDKETKKRRGAPTGRSGYQIFLKQECARLKACCQDIDGKTILRTAVEAWNKMSDNDKQPYVEESKKIKEQNKEAKMIIDNKQKEQNKEAIIIDNKKKSTQDLKRDEKRPNVSGGDYYCVTSQPLPNATVDLALKMTEKTSKDPFFPVDLDAYRSVDLPSRVFM 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04071 344 CDD HMG-box_SF 196 251 - -
Trre2g04071 344 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 178 288 - -
Trre2g04071 344 Pfam ARID/BRIGHT DNA binding domain 33 115 IPR001606 GO:0003677
Trre2g04071 344 CDD ARID 33 115 - -
Trre2g04071 344 ProSiteProfiles ARID domain profile. 22 119 IPR001606 GO:0003677
Trre2g04071 344 SMART hmgende2 192 261 IPR009071 -
Trre2g04071 344 Gene3D High mobility group box domain 178 258 IPR036910 -
Trre2g04071 344 SUPERFAMILY HMG-box 180 253 IPR036910 -
Trre2g04071 344 SMART bright_3 30 120 IPR001606 GO:0003677
Trre2g04071 344 MobiDBLite consensus disorder prediction 176 195 - -
Trre2g04071 344 SUPERFAMILY ARID-like 29 120 IPR036431 GO:0003677
Trre2g04071 344 SMART ARID_2 26 115 - -
Trre2g04071 344 Pfam HMG (high mobility group) box 196 255 IPR009071 -
Trre2g04071 344 Coils Coil 245 268 - -
Trre2g04071 344 Gene3D - 19 139 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04071 Trre-Chr2 48190463 48192991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04071 35 241 ARID Transcription Factor Family AT3G13350 22.727 5.47e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre2g04071 ARID 2.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04071 - - mtr:120577736 372.859