Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04063 ATGGAAGCTATTTACAAGTTGAGCTATGATGATGATGATGGTGACAAAAACGTTAACAACATTTCTGCTTCTGCTGCTCAATTGCAGCATCTAGGTGGAGGAGGAGGTGCTAATAATAATAATAACTACCTTCTTCAAATGGATCTAATTGGATCAGATATATCCGATCGGATTCTCAAGAACCAGATCGCCACTCACCCCCTCTATCCAAATCTACTATCTGCTTTTATTGATTGCCAAAAGGTTGGGGTACCATCAGAAGTTGCATCCCTACTTGAAGAAATAGGGCGTGAAAGCCACCACAACAATACTCTCCGTGAGATTGGAGATGATCCTGACCTTGACCACTTCATGGAATCATACTGTGAAATTCTTCATAAATATAAAGAGGAATTGTCCAAGCCATTCAATGAAGCGACAATGTTTTTGTGTAATATTGAATCACAACTAAGCCAACTCTGCAATGACACACAACAAGCAATATCATCTGATTATAACAACCGTTCAGATGAGGCAGCAGGGACATCGGAGGATGAATTGAGTTGTGGAAGGGTTGAAGCATTAGAAGTTCATCATGAAATTTGTGGCACATCATGTCAAGGTGATAAAGAGCTTAAAGAAATGCTCCTTCGTAAATATGGAGGTTATCTTAGCAACTTGAGAAAAGAATTTCTAAAGAAAAGGAAAAAGGGTAAACTACCAAAGGATGCTAGAAAAGCTTTGATGGATTGGTGGAATGTTCACTATAGGTGGCCTTATCCCACGGAGGAAGAGAAATTGCAACTATCAGAAATTACTGGACTTGATATAAAGCAAATAAATAATTGGTTCATAAATCAGAGGAAAAGACATTGGAAACCATCTGCAGATATGAGATTCGCCATTATGGAGGGTGTAAGTAGCAACGGCATAACAGGACCTCTGTAA 927 0.3905 MEAIYKLSYDDDDGDKNVNNISASAAQLQHLGGGGGANNNNNYLLQMDLIGSDISDRILKNQIATHPLYPNLLSAFIDCQKVGVPSEVASLLEEIGRESHHNNTLREIGDDPDLDHFMESYCEILHKYKEELSKPFNEATMFLCNIESQLSQLCNDTQQAISSDYNNRSDEAAGTSEDELSCGRVEALEVHHEICGTSCQGDKELKEMLLRKYGGYLSNLRKEFLKKRKKGKLPKDARKALMDWWNVHYRWPYPTEEEKLQLSEITGLDIKQINNWFINQRKRHWKPSADMRFAIMEGVSSNGITGPL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04063 308 SMART ELK_2 204 225 IPR005539 GO:0003677
Trre2g04063 308 Pfam KNOX1 domain 59 100 IPR005540 GO:0003677|GO:0005634
Trre2g04063 308 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Trre2g04063 308 SMART HOX_1 226 291 IPR001356 GO:0003677
Trre2g04063 308 SMART KNOX2_2 104 155 IPR005541 GO:0003677|GO:0005634
Trre2g04063 308 CDD homeodomain 236 288 IPR001356 GO:0003677
Trre2g04063 308 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Trre2g04063 308 SMART KNOX1_2 57 101 IPR005540 GO:0003677|GO:0005634
Trre2g04063 308 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981|GO:0006355
Trre2g04063 308 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 62 294 - -
Trre2g04063 308 SUPERFAMILY Homeodomain-like 226 296 IPR009057 -
Trre2g04063 308 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Trre2g04063 308 Pfam KNOX2 domain 108 154 IPR005541 GO:0003677|GO:0005634
Trre2g04063 308 Gene3D - 222 295 - -
Trre2g04063 308 Pfam ELK domain 204 225 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04063 Trre-Chr2 48017208 48021228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04063 53 305 Homeobox Transcription Factor Family AT1G23380 51.737 8.19e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre2g04063 KNOX2 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04063 - - mtr:11406488 455.292