Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04060 ATGGCATACGCTGCAATGAAACCCACTAAGCCTGGTTTGGAAGAATCTCAAGAACAAATCCATAAGATTAGGATCACCCTCTCTTCAAAAAATGTCAAAAATCTCGAAAAGGTTTGCAGTGACTTGGTTCGTGGTGCTAAGGATAAGCATCTTAGAGTGAAGGGACCAGTTAGGATGCCAACAAAAGTTCTTCACATTACAACCAGGAAATCTCCATGTGGAGAAGGTACAAACACATGGGACAGATTTGAGCTGCGTGTGCACAAGAGAGTCATTGATCTCTACAGTTCACCTGATGTGGTCAAGCAGATTACCTCGATCACAATTGAACCTGGTGTTGAAGTTGAGGTTACCATTGCTGATGCTTGA 369 0.4282 MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCSDLVRGAKDKHLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04060 122 Gene3D Ribosomal protein S10 domain 6 121 IPR036838 -
Trre2g04060 122 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 14 121 IPR001848 GO:0003735|GO:0005840|GO:0006412
Trre2g04060 122 SMART Ribosomal_S10_2 24 118 IPR027486 -
Trre2g04060 122 Pfam Ribosomal protein S10p/S20e 24 118 IPR027486 -
Trre2g04060 122 PRINTS Ribosomal protein S10 family signature 79 93 IPR001848 GO:0003735|GO:0005840|GO:0006412
Trre2g04060 122 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Trre2g04060 122 PRINTS Ribosomal protein S10 family signature 57 72 IPR001848 GO:0003735|GO:0005840|GO:0006412
Trre2g04060 122 NCBIfam 30S ribosomal protein S10 21 119 IPR005729 GO:0003735|GO:0006412|GO:0015935
Trre2g04060 122 Hamap 30S ribosomal protein S10 [rpsJ]. 20 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Trre2g04060 122 FunFam 40S ribosomal protein S20 7 121 - -
Trre2g04060 122 SUPERFAMILY Ribosomal protein S10 22 119 IPR036838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04060 Trre-Chr2 47994014 47995355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04060 1 122 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 90.164 1.72e-78 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04060 K02969 - gmx:100813093 241.891