Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04059 ATGTGTCCATCCCAATGTGTTGTGATCAGTTGTGACTTGTGTCTAGTGCTTTATCTTATTCTTGAACAACAACCTCATAGTGTCGACATGGATTGCAAGGAAGATCTATTGATCGAAGAAGTCTGCAAGCTCTATGATCAAATCTCAAGCCTAGACACACTCAAACCCTGCAAAAATGTCAACACACTTTTCACCAAACTTGTTCTCACATGCATGCCACCTAGTCCAATTGATGTTACCAAACTAACCACAAAAGTTCAAGAAATTAGGTCCAAACTCATAAGGCTATGTGGTGAAGCTGAAGGCCATTTAGAAAGCCACTACTCAACAATCATAGCTTCATACAATAATCCACTTAATAATCTCAACATTTTCCCCTATTATTCAAACTACCTCAAGCTTAGTCTCCTTGAATTCAATATCCTAACCAAACACTGCACTAATGTCCCTAAAAAAATTGCCTTTATTGGCTCAGGTCCACTTCCCCTTACTTCAATTGTCTTAGCCACAAACCACCTTAAAAACACAATCTTTCACAACTATGACATTGACCCTTTAGCCAACTCAAAAGCTTCTTGCTTAATTTCCTCTGATCCTGATTTATCAAAGCGTATGGTTTTTCACACCAATGATATAATGGATGTGTCAAATGCTTTGAAAGAATATGAAGTTGTTTATTTGGCCGCACTTGTGGGAATGAATGTCGAGGAAAAAAATAGAATCATCGATCATTTAGCTAAGTACATGGCACCAGGAGCACTCCTCATGCTGAGGAGTGCTCATGGCGCTCGTGCTTTTCTGTATCCAATTGTTGATACTAATGATCTCCGAGGTTTTGAGGTTCTCTCAGTGTTTCATCCTACGGACGAGGTTATCAATTCAGTTGTCATAGCTCGCAAGTATCCAATGGTTTTATTACCAAATAAGTGTTGTTCTGATGAGGTTCAAGCTTTCAAACCCCTGAGCAACCATGGGAATAACATGATTGAGGAATTGGTCGTTGAAGAAAATTAA 1014 0.3895 MCPSQCVVISCDLCLVLYLILEQQPHSVDMDCKEDLLIEEVCKLYDQISSLDTLKPCKNVNTLFTKLVLTCMPPSPIDVTKLTTKVQEIRSKLIRLCGEAEGHLESHYSTIIASYNNPLNNLNIFPYYSNYLKLSLLEFNILTKHCTNVPKKIAFIGSGPLPLTSIVLATNHLKNTIFHNYDIDPLANSKASCLISSDPDLSKRMVFHTNDIMDVSNALKEYEVVYLAALVGMNVEEKNRIIDHLAKYMAPGALLMLRSAHGARAFLYPIVDTNDLRGFEVLSVFHPTDEVINSVVIARKYPMVLLPNKCCSDEVQAFKPLSNHGNNMIEELVVEEN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04059 337 PANTHER NICOTIANAMINE SYNTHASE 3 33 302 IPR004298 GO:0030410|GO:0030418
Trre2g04059 337 Pfam Nicotianamine synthase protein 34 302 IPR004298 GO:0030410|GO:0030418
Trre2g04059 337 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 30 305 IPR004298 GO:0030410|GO:0030418
Trre2g04059 337 Gene3D Vaccinia Virus protein VP39 35 302 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04059 Trre-Chr2 47987351 47988364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04059 30 336 Nicotianamine Synthase Gene Family AT1G09240 60.759 8.02e-134 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04059 K05953 - gmx:100803630 470.314