Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04025 ATGGGAAGCAATAGCAGGAGAAAGAAACAGCAACACGATTTGGAGTTAGAAAAAGTTCGCTTAATCGGTTTAGCTCTTGAATTCGGCTACGATGAACACTCCGCAAACCAATGTTTCGATCGTCTTGTCGCTCTCTACGGTGATGATGGTCGTGATTTTATCACCGTTGAACATTGCGGCGATGATTTTCTTGTTGCTTTGGCGGAGTCAGTGCAAGACACGGAGGAATGGGATGATCTACGCGAAATGGAATCACAAGCTGTTGGAACTTTGAATCACGTGCTTGATGAAGGTCTTGCCACTTGTGGTGATGCTTCTAGAAACTTCGTTGATATTGTTGACGATTCGCCTCAGAAATGTCGGACCAAATTTGTTGAGTTGAGTTCAAGTGACGATGAAGATACGGATTTTAATGTTTCTAGGGTTCAACATCCTCCAAACTCCGCGGATTCCAGAAGTGGCATCACGCCAGGCTCAGTTTCATCAACTTCCAGAAAAAAACAGCCCTCCTTTGCTTCAAAGGAAAGAAATAGTACTCTCACTTATGAAGAATTGAAGGCGCTAGATGATATTGAATTGGCAAATGTCGTTATCTTCGGTAATAAGACATTTCGACCATTGCAGCATCAAGCATGTAAAGCAGCTTTGGCAAAACAAGATTCTTTTATTCTTATGCCTACAGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACCCTTCAACCAGGAGTTACAGTTGTTGTATCTCCCTTACTTTCACTTATTCAGGATCAGATAATAACACTTAACTTGAAGTTTGGAATTCCTGCTACATTTTTAAATTCTCAACAAACTGCTTCACAAGCTGCAGCTGTTCTCCAAGAGCTAAGAAAAGACAAGCCTTCGTGCAAGCTCTTGTATGTGACACCTGAGAGAATTGCTGGAAACCAATCATTTATTGGGATTCTAAAATGCATGCATCAGAAGGGACAACTAGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGTGGATTAGGATCTCTTAAGCAACATTTTCCATACGTACCTGTCATGGCATTGACTGCCACTGCAACTCACCCAGTTCGCGAGGACATCTTAAATGCTTTAAGAATTCCACATGCAATTGTTCTTGAAAGAAGCTTTGACAGACCGAATTTGAAGTATGAAGTGATTGCTAAGACAAAGGAACCGCTGAAGCAGCTTGGACAACTATTAATGGATCGTTTCAAGAGTCAGTGTGGCATTGTATACTGCCTTTCAAAAAGTGAATGTGTTGAGGTATCAAAATTCTTGAATGAGAAATGTAAAATTAAGGCAGCATATTACCATGCTGGCTTGGCTGTCCGCCAGAGAGTTTCTGTTCAAAAGAAATGGCATGATGGAGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGGATGGGGATAGACAAGCCTGATGTTCGATTTGTCATCCACAATACAATGTCAAAATCAATCGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGATAATCTTCCCGCCGTATGCATTGCTCTATACCAGAAGAAAGATTTTAGTAGAGTAGTATGCATGATAAGAAACGGCCAAGTATATAAAAAGGACAGTTTTAAGACAGCAATGGCTCAAGCCAAAATGATGCAACAGTACTGTGAATTAAAGGATGAATGCCGGAGACAAACCTTACTCAAACACTTCGGAGAATCTTTCGATAGAAAGTCTTGCAAGAATGGCTCCAGCCCTTGTGATAATTGTCTTAAGACTGCATCGTGA 1818 0.4136 MGSNSRRKKQQHDLELEKVRLIGLALEFGYDEHSANQCFDRLVALYGDDGRDFITVEHCGDDFLVALAESVQDTEEWDDLREMESQAVGTLNHVLDEGLATCGDASRNFVDIVDDSPQKCRTKFVELSSSDDEDTDFNVSRVQHPPNSADSRSGITPGSVSSTSRKKQPSFASKERNSTLTYEELKALDDIELANVVIFGNKTFRPLQHQACKAALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTASQAAAVLQELRKDKPSCKLLYVTPERIAGNQSFIGILKCMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQHFPYVPVMALTATATHPVREDILNALRIPHAIVLERSFDRPNLKYEVIAKTKEPLKQLGQLLMDRFKSQCGIVYCLSKSECVEVSKFLNEKCKIKAAYYHAGLAVRQRVSVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMIRNGQVYKKDSFKTAMAQAKMMQQYCELKDECRRQTLLKHFGESFDRKSCKNGSSPCDNCLKTAS 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04025 605 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 410 562 IPR001650 -
Trre2g04025 605 PANTHER DNA HELICASE RECQ FAMILY MEMBER 189 601 - -
Trre2g04025 605 MobiDBLite consensus disorder prediction 140 175 - -
Trre2g04025 605 MobiDBLite consensus disorder prediction 131 175 - -
Trre2g04025 605 Pfam DEAD/DEAH box helicase 206 374 IPR011545 GO:0003676|GO:0005524
Trre2g04025 605 Gene3D - 396 604 IPR027417 -
Trre2g04025 605 SMART helicmild6 438 520 IPR001650 -
Trre2g04025 605 NCBIfam RecQ family ATP-dependent DNA helicase 198 603 IPR004589 GO:0004386|GO:0006310
Trre2g04025 605 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 327 336 IPR002464 -
Trre2g04025 605 FunFam ATP-dependent DNA helicase 185 395 - -
Trre2g04025 605 FunFam ATP-dependent DNA helicase 396 603 - -
Trre2g04025 605 SMART ultradead3 200 404 IPR014001 -
Trre2g04025 605 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 388 IPR014001 -
Trre2g04025 605 CDD DEXHc_RecQ 198 395 - -
Trre2g04025 605 Gene3D - 161 395 IPR027417 -
Trre2g04025 605 Pfam Helicase conserved C-terminal domain 413 519 IPR001650 -
Trre2g04025 605 Pfam RecQ zinc-binding 532 601 IPR032284 -
Trre2g04025 605 CDD SF2_C_RecQ 396 529 - -
Trre2g04025 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 541 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04025 Trre-Chr2 47735220 47740255 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04025 418 518 Eukaryotic Initiation Factors Gene Family AT5G11170 31.683 1.24e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04025 K10899 - gmx:100806070 1012.68