Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04024 ATGGAAATGGGAAGCAATAGCAGGAGAAAGAAACAGCAACACGATTTGGAGTTAGAAAAAGTTCGCTTAATCGGTTTAGCTCTTGAATTCGGCTACGATGAACACTCCGCAAACCAATGTTTCGATCGTCTTGTCGCTCTCTACGGTGATGATGGTCGTGATTTTATCACCGTTGAACATTGCGGCGATGATTTTCTTGTTGCTTTGGCGGAGTCAGTGCAAGACACGGAGGAATGGGATGATCTACGCGAAATGGAATCACAAGCTGTTGGAACTTTGAATCACGTGCTTGATGAAGGTCTTGCCACTTGTGGTGATGCTTCTAGAAACTTCGTTGATATTGTTGACGATTCGCCTCAGAAATGTCGGACCAAATTTGTTGAGTTGAGTTCAAGTGACGATGAAGATACGGATTTTAATGTTTCTAGGGTTCAACATCCTCCAAACTCCGCGGATTCCAGAAGTGGCATCACGCCAGGCTCAGTTTCATCAACTTCCAGAAAAAAACAGCCCTCCTTTGCTTCAAAGGAAAGAAATAGTACTCTCACTTATGAAGAATTGAAGGCGCTAGATGATATTGAATTGGCAAATGTCGTTATCTTCGGTAATAAGACATTTCGACCATTGCAGCATCAAGCATGTAAAGCAGCTTTGGCAAAACAAGATTCTTTTATTCTTATGCCTACAGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACCCTTCAACCAGGAGTTACAGTTGTTGTATCTCCCTTACTTTCACTTATTCAGGATCAGATAATAACACTTAACTTGAAGTTTGGAATTCCTGCTACATTTTTAAATTCTCAACAAACTGCTTCACAAGCTGCAGCTGTTCTCCAAGAGCTAAGAAAAGACAAGCCTTCGTGCAAGCTCTTGTATGTGACACCTGAGAGAATTGCTGGAAACCAATCATTTATTGGGATTCTAAAATGCATGCATCAGAAGGGACAACTAGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGTGGATTAGGATCTCTTAAGCAACATTTTCCATACGTACCTGTCATGGCATTGACTGCCACTGCAACTCACCCAGTTCGCGAGGACATCTTAAATGCTTTAAGAATTCCACATGCAATTGTTCTTGAAAGAAGCTTTGACAGACCGAATTTGAAGTATGAAGTGATTGCTAAGACAAAGGAACCGCTGAAGCAGCTTGGACAACTATTAATGGATCGTTTCAAGAGTCAGTGTGGCATTGTATACTGCCTTTCAAAAAGTGAATGTGTTGAGGTATCAAAATTCTTGAATGAGAAATGTAAAATTAAGGCAGCATATTACCATGCTGGCTTGGCTGTCCGCCAGAGAGTTTCTGTTCAAAAGAAATGGCATGATGGAGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGGATGGGGATAGACAAGCCTGATGTTCGATTTGTCATCCACAATACAATGTCAAAATCAATCGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGATAATCTTCCCGCCGTATGCATTGCTCTATACCAGAAGAAAGATTTTAGTAGAGTAGTATGCATGATAAGAAACGGCCAAGTATATAAAAAGGACAGTTTTAAGACAGCAATGGCTCAAGCCAAAATGATGCAACAGTACTGTGAATTAAAGGATGAATGCCGGAGACAAACCTTACTCAAACACTTCGGAGAATCTTTCGATAGAAAGTCTTGCAAGAATGGCTCCAGCCCTTGTGATAATTGTCTTAAGACTGCATCGTGA 1824 0.4134 MEMGSNSRRKKQQHDLELEKVRLIGLALEFGYDEHSANQCFDRLVALYGDDGRDFITVEHCGDDFLVALAESVQDTEEWDDLREMESQAVGTLNHVLDEGLATCGDASRNFVDIVDDSPQKCRTKFVELSSSDDEDTDFNVSRVQHPPNSADSRSGITPGSVSSTSRKKQPSFASKERNSTLTYEELKALDDIELANVVIFGNKTFRPLQHQACKAALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTASQAAAVLQELRKDKPSCKLLYVTPERIAGNQSFIGILKCMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQHFPYVPVMALTATATHPVREDILNALRIPHAIVLERSFDRPNLKYEVIAKTKEPLKQLGQLLMDRFKSQCGIVYCLSKSECVEVSKFLNEKCKIKAAYYHAGLAVRQRVSVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMIRNGQVYKKDSFKTAMAQAKMMQQYCELKDECRRQTLLKHFGESFDRKSCKNGSSPCDNCLKTAS 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04024 607 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 390 IPR014001 -
Trre2g04024 607 FunFam ATP-dependent DNA helicase 398 605 - -
Trre2g04024 607 CDD DEXHc_RecQ 200 397 - -
Trre2g04024 607 SMART ultradead3 202 406 IPR014001 -
Trre2g04024 607 NCBIfam RecQ family ATP-dependent DNA helicase 200 605 IPR004589 GO:0004386|GO:0006310
Trre2g04024 607 CDD SF2_C_RecQ 398 531 - -
Trre2g04024 607 Gene3D - 163 397 IPR027417 -
Trre2g04024 607 MobiDBLite consensus disorder prediction 142 177 - -
Trre2g04024 607 MobiDBLite consensus disorder prediction 133 177 - -
Trre2g04024 607 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 412 564 IPR001650 -
Trre2g04024 607 SMART helicmild6 440 522 IPR001650 -
Trre2g04024 607 Pfam DEAD/DEAH box helicase 208 376 IPR011545 GO:0003676|GO:0005524
Trre2g04024 607 Pfam Helicase conserved C-terminal domain 415 521 IPR001650 -
Trre2g04024 607 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 329 338 IPR002464 -
Trre2g04024 607 Gene3D - 398 606 IPR027417 -
Trre2g04024 607 PANTHER DNA HELICASE RECQ FAMILY MEMBER 191 603 - -
Trre2g04024 607 FunFam ATP-dependent DNA helicase 187 397 - -
Trre2g04024 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 245 543 IPR027417 -
Trre2g04024 607 Pfam RecQ zinc-binding 534 603 IPR032284 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04024 Trre-Chr2 47735214 47740255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04024 420 520 Eukaryotic Initiation Factors Gene Family AT5G11170 31.683 1.29e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04024 K10899 - gmx:100806070 1012.68