Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04013 ATGGCGACAGAGCCTTTCTCAATTGTATCGGTTGTTGAAGATGTTATTCAAAAACATGGAAGCGAATTCAATGACATCGATTTCGCTTCAAAAATTAGAAAATCTGAAGAAGCTTCATCAAGAAGGAATGAAGCAGCTAAGTGGTTGCGAAATACAGTTGGAGGAAAAGACTTGTTGGATGAACCTTCTGAAGAAGCTTTCAGAATTGCATTGCGTAGTGGCATTATCCTTTGCACTGCTCTCAACAAAGTTCAACCTGGTGCTGTACCCAATGTAGTTGAAGCCCCGAGTGACATTGATAATATTCCTGATGGGGCAGCATTATCTGTATATCAATACTTTGAAAATGTAAGGAATTTTCTAGTAACTATGGAGGAGATGGGGCTTCCAACATTTGATGCTTCTGATTTGGAACAGGGAGGAAAATCTTCAAGAGTAGTGAATTGTGTTTTAGCACTTAAATCGTATAGTGAATGGAAACTAGAAGGCAAAAATGGATTGTGGAAATATGGAGGGAATCCGAAACCACAACCTACCGTTGGGAAAACATATGGGAGGAAAAACTCAATACCATTCATGAGGTCTTTGTCTAGAGGAGATGCTGTATCGTTGGGCGACAAAGATGGTTGCCCGAGTGAACATTCTTCAAGCATTGATGCTGTACTTAATGATTGCAGTGAAGAGGGTTCTATTCCTTCCTTGTATTCACTAGTTCGTGAAATTTTGCATGATAAGAAGCAAGAAGACATTCCATTTATAGTAGAATCTCTGCTTAGCAAAGTCATGGAAGAGTTTGAAAGTCGTGCGATCACAGTACAACAAGAAATGATGGAAGAAAATGAAGATGTAAAGTACCATGACGATGAAAAGTCAAGTATAAAGCTTTTGAAGCAGCAAAACATAATTCAAAGGCAACATGAAAACATCCAGGAATTGAAAATGATTGTTAATCAAACAAAAGCAGGAATGCACTGTCTACATGAGAAATACAGGGAGGATTTCATTTGTCTAGGTAGTCATCTGCATAGCCTAGCCACTTCTGCTTCAAGATATCAGAAAATTCTAGAAGAAAACCGCAAGTTATACAATCAGATGCAGGACTTGAAAGGTAATATTAGAGTGTACTGTAGAGTTCGCCCCTTAATAGGACAAAACAAATGTGGTATTGTCGGTAGTGTAGAGGAAGAAAGTATTTCAATCATAACGCCTTCTAAGAATGGAAAAGAGGTGAAGAAGACATTTACTTTTAACAAAGTGTTTGGTCCTTCTGCAACTCAAGGGGAGGTTTTCTCAGATACACAACCTCTGATTCGTTCGGTTTTGGATGGATTCAATGTTTGTATATTTGCCTACGGCCAGACAGGGTCAGGAAAAACACACACTATGTCTGGACCAGACAATATTACTGAGGAAACAGTTGGTGTCAACTACCGTGCTTTGAGGGATCTTTTCTGTCTCTTAGAACAAAGGAAAGACACCATTCACTATGATATCACTGTCCAGATGCTTGAGATATACAATGAGCAAAACCGAGCAGTTGGTTCTACTGCCATGAATGATCGGAGTAGCCGTTCTCATAGCTGCTTGACAGTTCATGTTCAAGGAAGAGAGCTTTCATCAGGAAATAGTCTTCGTGGATGTATCCACCTAGTTGATTTGGCAGGAAGTGAGAGGGTTGATAAATCTGAGGTGACAGGAGATAGGCTAAAGGAGGCTCAACATATTAACAAGTCGCTCTCCGCTTTAGGAGATGTAATTTCTTCCCTCGCCCAAAAGCAATCACATGTTCCTTACCGAAACAGTAAACTTACTCAATTGCTTCAGGACTCTCTTGGAGGCCAAGCAAAGACACTCATGTTTGTTCATATTAGCCCCGAGCCTGAAGCTCTTGGAGAAACAATTAGTACACTGAAGTTTGCTGAAAGAGTCTCAACTATTGAACTTGGTGCAGCACGAGCTAATAAAGAGAGCGGCGAAGTGAAAGAGCTGAAGGAACAGATTGCTAGTCTAAAGGCAACCATAGCAAGGATGAAGGGTGGAGAGTTGGAACACTTTAAACAGCCTTCAAATAGAATTATCAGAGGTCGCAAGCTACCAAGAGATTATTCTAGTAGCATTGAGGACCCTAAAAAAGCTTCATCAAAACCAAAAAGCCAAAGCCTTGATCCCGGAGACATATATTGGAATTCACCTACATGGCCACATGCTGGGGTAAATGGAAACGAGGATGATAAGGAATCGATTTCTTGTGGAAGCATGTATAAGGATGATAGCTTAACAACTGATGATAACTTCTCAGGACAATGGGACACAGAAAGCAAACAATCGTCTTCTCCATTGTGGATGGCCACCACATCCACAATTGATTCTGATGAGTTTGAGTTCGCAACTAGTGTATGTTCAGAACCAGACATGAGTTGGCAATCCCATTCACCAAAAACAACCGCCATTTCCAGTTTATCAGTGTCTAGACCAAAGAGATCGGTTCATCTCAGACATGGGAAGAACTTAGAAACCAGGAGTACGATCCCATCGATGCTTCCTTTATCACCAAGAAAACATCCCACCTCAGCTAGCCAACCAAGAAAGCATTCATCAGGTTCAATTGATGCTAAAAGAAGAAGTGGAAATGCCAAATGA 2640 0.4064 MATEPFSIVSVVEDVIQKHGSEFNDIDFASKIRKSEEASSRRNEAAKWLRNTVGGKDLLDEPSEEAFRIALRSGIILCTALNKVQPGAVPNVVEAPSDIDNIPDGAALSVYQYFENVRNFLVTMEEMGLPTFDASDLEQGGKSSRVVNCVLALKSYSEWKLEGKNGLWKYGGNPKPQPTVGKTYGRKNSIPFMRSLSRGDAVSLGDKDGCPSEHSSSIDAVLNDCSEEGSIPSLYSLVREILHDKKQEDIPFIVESLLSKVMEEFESRAITVQQEMMEENEDVKYHDDEKSSIKLLKQQNIIQRQHENIQELKMIVNQTKAGMHCLHEKYREDFICLGSHLHSLATSASRYQKILEENRKLYNQMQDLKGNIRVYCRVRPLIGQNKCGIVGSVEEESISIITPSKNGKEVKKTFTFNKVFGPSATQGEVFSDTQPLIRSVLDGFNVCIFAYGQTGSGKTHTMSGPDNITEETVGVNYRALRDLFCLLEQRKDTIHYDITVQMLEIYNEQNRAVGSTAMNDRSSRSHSCLTVHVQGRELSSGNSLRGCIHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVISSLAQKQSHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPEALGETISTLKFAERVSTIELGAARANKESGEVKELKEQIASLKATIARMKGGELEHFKQPSNRIIRGRKLPRDYSSSIEDPKKASSKPKSQSLDPGDIYWNSPTWPHAGVNGNEDDKESISCGSMYKDDSLTTDDNFSGQWDTESKQSSSPLWMATTSTIDSDEFEFATSVCSEPDMSWQSHSPKTTAISSLSVSRPKRSVHLRHGKNLETRSTIPSMLPLSPRKHPTSASQPRKHSSGSIDAKRRSGNAK 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04013 879 Gene3D Kinesin motor domain 314 508 IPR036961 -
Trre2g04013 879 Coils Coil 351 371 - -
Trre2g04013 879 MobiDBLite consensus disorder prediction 838 865 - -
Trre2g04013 879 PRINTS Kinesin heavy chain signature 547 565 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g04013 879 PRINTS Kinesin heavy chain signature 443 464 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g04013 879 PRINTS Kinesin heavy chain signature 596 617 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g04013 879 PRINTS Kinesin heavy chain signature 516 533 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g04013 879 MobiDBLite consensus disorder prediction 803 879 - -
Trre2g04013 879 MobiDBLite consensus disorder prediction 803 825 - -
Trre2g04013 879 MobiDBLite consensus disorder prediction 687 780 - -
Trre2g04013 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 678 IPR027417 -
Trre2g04013 879 Coils Coil 653 680 - -
Trre2g04013 879 SMART ch_5 41 156 IPR001715 GO:0005515
Trre2g04013 879 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 313 522 - -
Trre2g04013 879 MobiDBLite consensus disorder prediction 687 715 - -
Trre2g04013 879 ProSiteProfiles Calponin homology (CH) domain profile. 39 158 IPR001715 GO:0005515
Trre2g04013 879 Coils Coil 262 282 - -
Trre2g04013 879 SUPERFAMILY Calponin-homology domain, CH-domain 36 171 IPR036872 -
Trre2g04013 879 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 582 665 - -
Trre2g04013 879 Gene3D - 34 170 IPR036872 -
Trre2g04013 879 Gene3D Kinesin motor domain 509 685 IPR036961 -
Trre2g04013 879 ProSiteProfiles Kinesin motor domain profile. 371 646 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g04013 879 SMART kinesin_4 369 654 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g04013 879 Pfam Calponin homology (CH) domain 40 158 IPR001715 GO:0005515
Trre2g04013 879 CDD CH_AtKIN14-like 41 155 - -
Trre2g04013 879 Pfam Kinesin motor domain 509 646 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g04013 879 PANTHER KINESIN-LIKE PROTEIN KLP-3 46 509 IPR027640 GO:0003777|GO:0007018
Trre2g04013 879 MobiDBLite consensus disorder prediction 753 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04013 Trre-Chr2 47538523 47544334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04013 359 646 Calmodulin-binding Proteins AT5G65930 39.474 1.47e-64 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04013 K10406 - gmx:100816952 992.26