Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04012 ATGAAGCAACCACTTGTTCCGTTGGCAACACTGATCGGCCGTGAGTTACGAAATGGAAAAACGGAGAAGCCTTTTGTCAAGTATGGACAGGCTGGTTTGGCAAAGAAAGGAGAAGATTATTTTCTAATCAAGACAGATTGTGAGAGGGTTCCCGGGGATTCTTCAACACTGTTTTCTGTCTTTGCGATCCTTGACGGGCATAATGGTATATCCGCTGCTATTTTTGCGAAGGAGAACATACTAAACAATGTCATGAGTGCAATACCGCAAGGTATAAGCAGAGAGGAGTGGCTTCAAGCTCTGCCTCGGGCTCTAGTTGTCGCTTTCGTGAAAACTGACATGGAATTTCAGAAAAAAGGAGAAACATCTGGAACAACAGCTACATTTGTTATTATTGATGAATGGACTGTTACGGTTGCATCCGTTGGGGATTCCCGATGCATATTAGATGCCCAGGGAGGTGTTGTTTCTCTCTTGACAGTTGATCATAGATTGGAAGAAAATGTAGAAGAGAGGGAACGCGTTACTGCCAGTGGTGGTGAAGTAGGAAGACTCAATGTATTTGGAGGCAATGAGGTGGGGCCACTTCGCTGCTGGCCCGGTGGATTGTGCCTTTCTAGATCGATAGGCGACACAGATGTGGGAGAATATATCGTTCCAATACCACATGTTAAGCAAGTGAAGCTTTCAAATGCTGGCGGAAGGCTTATCATAGCTTCTGATGGTATTTGGGATACTTTGTCTTCTGAAACGGCTGCCAAGTCGTGTCGTGGTGTACCTGCAGAACTTGCTGCAAAGCTGGTGGTTAAGGAAGCTCTAAGGTCAAGAGGGCTGAAGGATGATACAACCTGCCTTGTTGTAGATATTATTCCTTCAGACTATCCTATGTCGCCGATGGCAACAACTCCTAGAAAGAAACAGAATATGCTAAGTTCACTTCTCTTTGGAAAGAAATCTCCAAACTCTACAAATAAAGGAACTAATAAGCTTTCTGCAGTTGGGGTTGTGGAAGAGTTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGGCTAGGTAAGGATGTTCCTTCCAATACGAATTCTGGTATTTATCGCTGTGCGGTTTGCCTAGCAGATCAACCCTCTGGTGATGGTTTATCAGTGAACACCGATCATTTTATCACTCCAGTATCCAAACCACGAGAAGGTCTATTCCTATGCGCAAACTGTCAGAAGAAAAAAGATGCCATGGAAGGCAAAAGGTCCTGA 1248 0.4439 MKQPLVPLATLIGRELRNGKTEKPFVKYGQAGLAKKGEDYFLIKTDCERVPGDSSTLFSVFAILDGHNGISAAIFAKENILNNVMSAIPQGISREEWLQALPRALVVAFVKTDMEFQKKGETSGTTATFVIIDEWTVTVASVGDSRCILDAQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDTLSSETAAKSCRGVPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDYPMSPMATTPRKKQNMLSSLLFGKKSPNSTNKGTNKLSAVGVVEELFEEGSAMLTERLGKDVPSNTNSGIYRCAVCLADQPSGDGLSVNTDHFITPVSKPREGLFLCANCQKKKDAMEGKRS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04012 415 Gene3D - 25 293 IPR036457 -
Trre2g04012 415 SMART PP2C_4 15 287 IPR001932 -
Trre2g04012 415 PANTHER PROTEIN PHOSPHATASE 38 288 IPR015655 GO:0004722|GO:0006470
Trre2g04012 415 SUPERFAMILY PP2C-like 30 289 IPR036457 -
Trre2g04012 415 FunFam probable protein phosphatase 2C 5 27 294 - -
Trre2g04012 415 Pfam Protein phosphatase 2C 55 273 IPR001932 -
Trre2g04012 415 CDD PP2Cc 35 289 IPR001932 -
Trre2g04012 415 ProSiteProfiles PPM-type phosphatase domain profile. 17 289 IPR001932 -
Trre2g04012 415 SMART PP2C_SIG_2 42 289 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04012 Trre-Chr2 47503599 47506286 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04012 2 414 PP2C-type Phosphatase Gene Family AT1G09160 75.787 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04012 - - gmx:100791944 719.539