Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g04002 ATGTCGACTGAGCCGTTGCTTCAACCGTCCGATACAGTGTCAGCGTTCCGGCAATGCGGCGGCGAACCGGCGAGGATTTTCGAGGAATTGCCGAAAGCAAGTATCGTATCCGTTTCACGACCAGAGACCGGTGAAATAAGTCCAATTCTACTTTCTTATACCATTGAATTGCAGTATAAACAGTTCAAATGGCGTCTAAGGAAGAAAGCATCACAAGTTCTCTATTTACAGTTTGCTTTGCGGAAACGTGCAATAATTGAAGAATTTCATGACAAGCAAGGACAGGTAAAAGAATGGCTTTATAGCTTAGGAATAGTAGATCAAACGGTAATGATGCAAGATGATGAAGAACCTGATGATGGATCTGTACCTACACATCATGAAGACAGTGTCAGTAACAGATATGTCCCATCTGTTGCTGCTCTATCGATAATTCGTCCATCACTAGGAGGTCAGCAGTCAGTTGCAGATAGAGCCAAAATTGCAATGCAAAATTATTTGGATCTTTTTTTAGGAAATCTAGAGATTGTGAATTCTCGAGAGGTCTGCAAGTTTTTGGAGGTCTCCAGGTTATCTTTTTTACAAGAGTATGGTCCAAAGCTGAGAGAAGGATATGTAACCGTGAAGCATTTGTCAAATATTTCACTGGATTCAGATGTAACATGCTTTCCATGTCATTGGTTTCACTTTTGTGATAACAATTGGAAGAAGGTATGGGCAGTTTTGAAGCCTGGGTTTTTGGCCTTGCTGGAAGATCCCTTCAACAACAAGCCACTGGATATAGTTATGTTTGATGTCCTTCCATCCTCAACTGGCAAGGGAGAGACCAAAATCTATTTAGCTGAACCTGTAAAGGAACGCAATCCCTTGCGTTACACATTTAAGGTTACTGGTGGAAACAGGAGCATTTTCTTGAGAACTATCAGCAGTGCTAAAGTTAAAACTTGGGTTACTGCAATTAATGAAGCTGGTCTAAGACCTATGGAGGGGTGGTGTTCTCCTCATCGCTTTGGTTCATTTGCTCCCGTAAGAGGTTTGACTGTAGATGGAAGCCAAGCCCAATGGTATGTAGATGGAAAAGCTGCATTTGAAGCAATTGCTTTTTCAATTCAAGATGCAAAATCAGAGATCTTCATAACAGGTTGGTGGCTGTGTCCAGAGCTATACATGAGGCGGCCTTTTGATAGTTTTCCTACCTTTAGGTTAGACTCATTACTGGAAGAAAAAGCTAAACAAGGGGTTCAGATCTACGTGCTTCTCTACAAGGAGGTTTCTATAGCTTTGAAAATCAACAGTTTGTACAGTATGAGAAGACTTCTCAAAATTCATGAGAACGTGAGGGTATTACGCTATCCCGACCATTTTGCTTCTCGTGTGTATTTATGGTCACACCATGAAAAACTTGTAATTATTGATTACAAGGTTTGCTTTCTTGGAGGATTAGATTTATGCTTTGGACGATATGACACACCTGAGCATCAAGTGGGTGATTGTCCCTCTGTAATATGGCCTGGAAAGGACTATTACAATCCAAGAGAATCTGAACCAAATTCATGGGAAGACACCATGAGAGACGAATTGGATCGCCACAAATATCCCCGTATGCCATGGCATGATGTCCATTGTGCTCTTTGGGGACCTGCATGTCGTGACATTGCTCGGCACTTTGTTCAACGTTGGAATCATGCTAAGAGAACTAAAGCTCCAAATGAACATGAGATTCCTCTACTTATGCCTCACCATCACATGGTCATCCCACATTACATGGGAAGAAGCAAAGAGATTGACATTGATAATAGGAAGGATGAAGATGACAAGAAAGAAATTGAAAGGCAAGATTCATTCTCCTCACAATCTCCATTGCAAGATATACCACTACTCTTACCTCAAGAAGCTGACGGAGCAGTTATTTCGAGTGAAGATGATAGAAATTCAAGCGAAAGTTCTCCATTATTGACCCAAAATCTGGACAGTGAAACTTTAGTTTCAGATAACCAGAAGAAAGGACTTCAAGATGAAGCTGTTGCTTTTAACTTGGAGGATCAATGCATTGTTGATGTTGTAGATGATTGGTGGGAAAAACCAGAAGGTACTAATGATGCCACTTCTTTGGAATATGGACAAGTTGGTCCACGTACTACTTGTCACTGTCAGGTAATCAGAAGTGTAAGCCAGTGGTCTGTTGGAACAAGTCACCCTGAAGAAAGTATTCACACTGCTTATTGTTCTCTTATTGAAAAGGCAAAGCATTTTATCTACATAGAGAACCAATTTTTCATATCAGGTCTAGTAAAGGATGACACAATACAAAACCGTATTTTGGAAGCAATATACAGGCGTATTTTGCAAGCCCACAAAGAACAGGAAGATTTTAGAGTTATAATTGTGTTGCCCCTCTTGCCTGGCTTCCAGGGTGGTCTGGATGATGGTGGTGCTGCAACTGTGAGAGCCTTAACACATTGGCAGTATAGAACAATTTCTAGAGAAAGGCACTCCATATTACACAATCTGGAAGCTATACTTGGTCGTAAGACACATGATTATATTTCTTTTTATGGTCTAAGATCTCATGGTAGACTTTACCCAGATGGTCCTATGGCAACTTGTCAGGTATATGTACACAGTAAGTTGATGATAATTGATGACCGTGTAGCTTTGATAGGATCGTCTAATATAAATGACCGGAGTTTGCTTGGATCAAGAGACTCTGAGATCGGAGTGGTTATAGAAGACAAAGAATATGTTGAATCACTGATGAACGGAAAGCCATGGAAGGCTGGTAAATTTTCCCATAGCCTCCGCTGTTCCCTATGGTCTGAGCATCTTGGTCTTCATACCGGAGAGATTAATAAAATTACTGATCCAGTGGCTGATTCAACTTACAAGGATTTGTGGTTAGCTACTGCAAAGGAAAATACTAGAATCTACCATGAAGTCTTTGCTTGCATTCCCAATGATCAAATACACTCAAGAGCTGCACTTCGGCAAAGCATGGTACACTGGAAGGAAAAACTTGGCCAAACCATCATAGATTTAGGAATAGCCCCTGAGAAAGTAATCTGTCATGAGAATGGAGAAGCAAAAGTAACAGACTCGATAGATAGATTGAAGTGTATAAAGGGACATCTTGTTTCCTTTCCTTTGGATTTCATGCGTGAGGAAGATTTAAGACCAGCTGTTATTGAGAGTGAGTTTTATGTATCTCCTCAAGTATATCATTAA 3222 0.4063 MSTEPLLQPSDTVSAFRQCGGEPARIFEELPKASIVSVSRPETGEISPILLSYTIELQYKQFKWRLRKKASQVLYLQFALRKRAIIEEFHDKQGQVKEWLYSLGIVDQTVMMQDDEEPDDGSVPTHHEDSVSNRYVPSVAALSIIRPSLGGQQSVADRAKIAMQNYLDLFLGNLEIVNSREVCKFLEVSRLSFLQEYGPKLREGYVTVKHLSNISLDSDVTCFPCHWFHFCDNNWKKVWAVLKPGFLALLEDPFNNKPLDIVMFDVLPSSTGKGETKIYLAEPVKERNPLRYTFKVTGGNRSIFLRTISSAKVKTWVTAINEAGLRPMEGWCSPHRFGSFAPVRGLTVDGSQAQWYVDGKAAFEAIAFSIQDAKSEIFITGWWLCPELYMRRPFDSFPTFRLDSLLEEKAKQGVQIYVLLYKEVSIALKINSLYSMRRLLKIHENVRVLRYPDHFASRVYLWSHHEKLVIIDYKVCFLGGLDLCFGRYDTPEHQVGDCPSVIWPGKDYYNPRESEPNSWEDTMRDELDRHKYPRMPWHDVHCALWGPACRDIARHFVQRWNHAKRTKAPNEHEIPLLMPHHHMVIPHYMGRSKEIDIDNRKDEDDKKEIERQDSFSSQSPLQDIPLLLPQEADGAVISSEDDRNSSESSPLLTQNLDSETLVSDNQKKGLQDEAVAFNLEDQCIVDVVDDWWEKPEGTNDATSLEYGQVGPRTTCHCQVIRSVSQWSVGTSHPEESIHTAYCSLIEKAKHFIYIENQFFISGLVKDDTIQNRILEAIYRRILQAHKEQEDFRVIIVLPLLPGFQGGLDDGGAATVRALTHWQYRTISRERHSILHNLEAILGRKTHDYISFYGLRSHGRLYPDGPMATCQVYVHSKLMIIDDRVALIGSSNINDRSLLGSRDSEIGVVIEDKEYVESLMNGKPWKAGKFSHSLRCSLWSEHLGLHTGEINKITDPVADSTYKDLWLATAKENTRIYHEVFACIPNDQIHSRAALRQSMVHWKEKLGQTIIDLGIAPEKVICHENGEAKVTDSIDRLKCIKGHLVSFPLDFMREEDLRPAVIESEFYVSPQVYH 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g04002 1073 SMART pld_4 869 896 IPR001736 GO:0003824
Trre2g04002 1073 SMART pld_4 460 487 IPR001736 GO:0003824
Trre2g04002 1073 Gene3D Endonuclease Chain A 346 586 - -
Trre2g04002 1073 PIRSF PLD_euk 33 1073 IPR016555 GO:0004630|GO:0006654|GO:0048017
Trre2g04002 1073 SMART PH_update 200 327 IPR001849 -
Trre2g04002 1073 Pfam Phospholipase D Active site motif 460 487 IPR001736 GO:0003824
Trre2g04002 1073 SUPERFAMILY PH domain-like 232 323 - -
Trre2g04002 1073 MobiDBLite consensus disorder prediction 590 613 - -
Trre2g04002 1073 MobiDBLite consensus disorder prediction 639 665 - -
Trre2g04002 1073 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 460 487 IPR001736 GO:0003824
Trre2g04002 1073 PANTHER PHOSPHOLIPASE D 157 1056 IPR015679 -
Trre2g04002 1073 Gene3D - 199 324 IPR011993 -
Trre2g04002 1073 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 869 896 IPR001736 GO:0003824
Trre2g04002 1073 FunFam Phospholipase 703 923 - -
Trre2g04002 1073 MobiDBLite consensus disorder prediction 637 665 - -
Trre2g04002 1073 CDD PLDc_vPLD1_2_yPLD_like_1 353 498 - -
Trre2g04002 1073 Gene3D Endonuclease Chain A 692 932 - -
Trre2g04002 1073 ProSiteProfiles PH domain profile. 199 325 IPR001849 -
Trre2g04002 1073 Pfam PLD-like domain 742 916 IPR025202 -
Trre2g04002 1073 MobiDBLite consensus disorder prediction 590 624 - -
Trre2g04002 1073 SUPERFAMILY Phospholipase D/nuclease 322 580 - -
Trre2g04002 1073 SUPERFAMILY Phospholipase D/nuclease 707 919 - -
Trre2g04002 1073 CDD PLDc_vPLD1_2_yPLD_like_2 729 913 - -
Trre2g04002 1073 CDD PH_PLD 177 323 - -
Trre2g04002 1073 Pfam PH domain 226 323 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g04002 Trre-Chr2 47398738 47411155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g04002 25 1073 Phospholipase D Gene Family (Wang group) AT3G05630 66.446 0.0 1417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g04002 K01115 - gmx:100796914 1876.68