Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03993 ATGAATAGTAATCAAGCTTATGATTTGCAAACCTTGCTTAGTGCTGTTTTAACTAATCATCAAACACGTTTAGATGGTTTTCATGAAGTTAATCCTTATCCAAAAATTAGCACTACTTTATCAAACCCTCTTTCTGATGGGACCAAACTTTATAGGATATCTCTTTCTTTTTTCGCTCAATATCGGGTTAATACCGTCGTTGGAAGATTAACAGATAAAGCAATTATAATGAATAATAGAAAATTGTTACAGACAAGTGTTGACAATGTGATTGTGACACAAAAAGTGATTGTTAACCCTGATGGATCTGGAGATTTTGTGACAATAAATGATGCTGTGGATGCTGCACCTAACAAAACAGGCACCAACAATGGCTACCATGTAATTTATGTTGTTGCTGGGATTTATAATGAGTATGTGTCTATTGCTAAGAGTAAAGAGAATCTAATGATTGTCGGAGATGGTATTGGTCGGACTGTGATTACCAGTAATCGTAGCGTGGTTGATGGTTGGACCACTTTCCAGTCTGCAACTTTTGCTGTAACTGGAAAAGGATTTGTTGCTGTGAACATAACATTTCAAAACACCGCGGGATCAAGCAAGCATCAAGCAGTTGCAGTGAGAAACGGAGCTGACATGTCTGTTTTCTACAATTGTAGCTTCGAAGGTTACCAAGACACATTATACGCGCATTCTCTTCGACAATTCTACAAAAACTGTGACATTTACGGCACAGTTGATTTCATATTCGGCAATGCAGCAGCAATATTCCAAAACTGTAACATATATCCAAGACTCCCAATGCAAAATCAATTCAATGCAATTACAGCACAAGGAAGAACAGATCCTAATCAAAACACAGGGTTCTCTATATGGAATTGTTACATTGTAGCAGCTAGTGATTTGGGGGGTGCAAATAATAATTTTAATGGTATAAAGACATATTTGGGAAGGCCTTGGAAGGAGTATTCAAGAACAATTTACTTGCAATGTTTTATTGATGGTTTGATTGATTCAAAGGGTTGGATTGAATGGTTAGGTGATTTTGCATTAAACACATTGTATTATGCTGAATTTGCTAATTGGGGACAAGGTTCAAATACTAGTAATAGGGTCACATGGAAAGGGTACCATCAAATTGATGGAAAAAATGCTGATGAATTCACAGTTTACAAATTTATTCAAGGTGACATGTGGTTGCCTAAGACAGGAGTGCCTTTTAGAGCTGGGTTATAG 1236 0.3673 MNSNQAYDLQTLLSAVLTNHQTRLDGFHEVNPYPKISTTLSNPLSDGTKLYRISLSFFAQYRVNTVVGRLTDKAIIMNNRKLLQTSVDNVIVTQKVIVNPDGSGDFVTINDAVDAAPNKTGTNNGYHVIYVVAGIYNEYVSIAKSKENLMIVGDGIGRTVITSNRSVVDGWTTFQSATFAVTGKGFVAVNITFQNTAGSSKHQAVAVRNGADMSVFYNCSFEGYQDTLYAHSLRQFYKNCDIYGTVDFIFGNAAAIFQNCNIYPRLPMQNQFNAITAQGRTDPNQNTGFSIWNCYIVAASDLGGANNNFNGIKTYLGRPWKEYSRTIYLQCFIDGLIDSKGWIEWLGDFALNTLYYAEFANWGQGSNTSNRVTWKGYHQIDGKNADEFTVYKFIQGDMWLPKTGVPFRAGL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03993 411 Pfam Pectinesterase 96 397 IPR000070 GO:0030599|GO:0042545
Trre2g03993 411 Gene3D - 89 411 IPR012334 -
Trre2g03993 411 ProSitePatterns Pectinesterase signature 2. 242 251 IPR033131 -
Trre2g03993 411 FunFam Pectinesterase 89 411 - -
Trre2g03993 411 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1 59 IPR035513 -
Trre2g03993 411 SUPERFAMILY Pectin lyase-like 95 410 IPR011050 -
Trre2g03993 411 PANTHER PECTINESTERASE 3 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03993 Trre-Chr2 47198658 47203094 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03993 4 411 Carbohydrate Esterase AT4G02330 54.018 7.97e-164 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03993 K01051 - gmx:100810329 658.292