Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03992 ATGAAAACATCAACTACCATATACACTCTTCTTGTTTCCTTCATTATTATTCTCTCCTTCCTCTCTCCCTCTCTAGCTTCTCTTCTTGATCCCTCCCCAAATACCACATGCAACATTACACCTTACCCATCTTTCTGTACAACTACTCTTCCTCCTAACTATTTAACTATACATGATCAAACACTTTTCTTCATCCAACAATCTTTATCAATAACTAATACCATTTTTCAATTAATCTCTTCTTATTTTAACCAATCCAACATTCAATATTCTACTTTACTTGTGCTTCAAGATTGTCTTAATCTTTCTGAAATAAATATTGATTTCTTGTCCAATGTTCTCCAAGCCATAGAAAGTTTAGAAAACAATACTAATACTACTATAATGAATAGTAATCAAGCTTATGATTTGCAAACCTTGCTTAGTGCTGTTTTAACTAATCATCAAACACGTTTAGATGGTTTTCATGAAGTTAATCCTTATCCAAAAATTAGCACTACTTTATCAAACCCTCTTTCTGATGGGACCAAACTTTATAGGATATCTCTTTCTTTTTTCGCTCAATATCGGGTTAATACCGTCGTTGGAAGATTAACAGATAAAGCAATTATAATGAATAATAGAAAATTGTTACAGACAAGTGTTGACAATGTGATTGTGACACAAAAAGTGATTGTTAACCCTGATGGATCTGGAGATTTTGTGACAATAAATGATGCTGTGGATGCTGCACCTAACAAAACAGGCACCAACAATGGCTACCATGTAATTTATGTTGTTGCTGGGATTTATAATGAGTATGTGTCTATTGCTAAGAGTAAAGAGAATCTAATGATTGTCGGAGATGGTATTGGTCGGACTGTGATTACCAGTAATCGTAGCGTGGTTGATGGTTGGACCACTTTCCAGTCTGCAACTTTTGCTGTAACTGGAAAAGGATTTGTTGCTGTGAACATAACATTTCAAAACACCGCGGGATCAAGCAAGCATCAAGCAGTTGCAGTGAGAAACGGAGCTGACATGTCTGTTTTCTACAATTGTAGCTTCGAAGGTTACCAAGACACATTATACGCGCATTCTCTTCGACAATTCTACAAAAACTGTGACATTTACGGCACAGTTGATTTCATATTCGGCAATGCAGCAGCAATATTCCAAAACTGTAACATATATCCAAGACTCCCAATGCAAAATCAATTCAATGCAATTACAGCACAAGGAAGAACAGATCCTAATCAAAACACAGGGTTCTCTATATGGAATTGTTACATTGTAGCAGCTAGTGATTTGGGGGGTGCAAATAATAATTTTAATGGTATAAAGACATATTTGGGAAGGCCTTGGAAGGAGTATTCAAGAACAATTTACTTGCAATGTTTTATTGATGGTTTGATTGATTCAAAGGGTTGGATTGAATGGTTAGGTGATTTTGCATTAAACACATTGTATTATGCTGAATTTGCTAATTGGGGACAAGGTTCAAATACTAGTAATAGGGTCACATGGAAAGGGTACCATCAAATTGATGGAAAAAATGCTGATGAATTCACAGTTTACAAATTTATTCAAGGTGACATGTGGTTGCCTAAGACAGGAGTGCCTTTTAGAGCTGGGTTATAG 1620 0.3556 MKTSTTIYTLLVSFIIILSFLSPSLASLLDPSPNTTCNITPYPSFCTTTLPPNYLTIHDQTLFFIQQSLSITNTIFQLISSYFNQSNIQYSTLLVLQDCLNLSEINIDFLSNVLQAIESLENNTNTTIMNSNQAYDLQTLLSAVLTNHQTRLDGFHEVNPYPKISTTLSNPLSDGTKLYRISLSFFAQYRVNTVVGRLTDKAIIMNNRKLLQTSVDNVIVTQKVIVNPDGSGDFVTINDAVDAAPNKTGTNNGYHVIYVVAGIYNEYVSIAKSKENLMIVGDGIGRTVITSNRSVVDGWTTFQSATFAVTGKGFVAVNITFQNTAGSSKHQAVAVRNGADMSVFYNCSFEGYQDTLYAHSLRQFYKNCDIYGTVDFIFGNAAAIFQNCNIYPRLPMQNQFNAITAQGRTDPNQNTGFSIWNCYIVAASDLGGANNNFNGIKTYLGRPWKEYSRTIYLQCFIDGLIDSKGWIEWLGDFALNTLYYAEFANWGQGSNTSNRVTWKGYHQIDGKNADEFTVYKFIQGDMWLPKTGVPFRAGL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03992 539 Pfam Plant invertase/pectin methylesterase inhibitor 34 183 IPR006501 GO:0004857
Trre2g03992 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 187 IPR035513 -
Trre2g03992 539 SUPERFAMILY Pectin lyase-like 223 538 IPR011050 -
Trre2g03992 539 FunFam Pectinesterase 217 539 - -
Trre2g03992 539 Pfam Pectinesterase 224 525 IPR000070 GO:0030599|GO:0042545
Trre2g03992 539 Gene3D - 217 539 IPR012334 -
Trre2g03992 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 189 IPR035513 -
Trre2g03992 539 PANTHER PECTINESTERASE 15 529 - -
Trre2g03992 539 SMART PMEI_2 28 185 IPR006501 GO:0004857
Trre2g03992 539 CDD PMEI-like_3 35 189 - -
Trre2g03992 539 ProSitePatterns Pectinesterase signature 2. 370 379 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03992 Trre-Chr2 47198658 47203478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03992 10 539 Carbohydrate Esterase AT4G02330 47.295 9.07e-176 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03992 K01051 - gmx:100810329 760.755