Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03991 ATGGTTGAGGAAGATACAAAAAGAAGGAGGAGAATCATCATAATAAGCGTATCAACATTTTTACTAGTGGCTATGGTGGTTGCGGTTACCGTTGGGGTAAATTTTAATACTAGCAATGATTCTAATTCCGAAAATAACAATGAGAAGTCTCACATGGCTTCAACTATAAAAGCAGTGAAAACCTTTTGCAAACCAACCGATTATAAAAAAGAATGCGAGGAGAGTCTATTAGCAAATGTCGGCAACACAACGGATTCAAGAGAACTCATTAAATTGGCTTTCAATATTACCGTTGGAAAAATCGGGGAAGGAATCAAGAAAACCAATTTATTGCAAGAGGCCGAGAAGGAACCTAGGGCAAAAATGGCACTTGACACATGCAAGAAATTAATGGATCTATCAATTGGCGAATTCGATAGGTCGCTTGAGAGAATAAAAAAATTTGATCTCAACAATCTTGAAAGTTTTCTTATGAGTTTGAAAGTTTGGCTAAGTGGTGCAGTTACATATCAAGAAACTTGTATAGATGCTTTTGAGAATACTACTAGTGATGCTAGTAACAAAATGAAGACTATTTTAACTTCTTCAATGCACATGACTAGCAATGCACTTGCAATCATTTCTGATTTGGCGGATAATATTTTGAATTTGAATTCGACAAGAGACGGACGTCAACTTATCGATATCGATAATTATAAGGGTAAATATGTAAGTGAACAAATATTTGAACATGATGATGTTAATGAGGTTCCTTCTTGGGTTGGTGATGATTCAAGTGTTGGTGTTCGTAGACTTCTTAATGTACCTCAAAATAAACTCAAGGCTGATGCGGTTGTAGCTATAGATGGTAGTGGGAAGTTTAAGAGTATTAATGATGCTTTGAAGCAAGTTCCAAAAAAGAACCAAAAACCATTTATTGTTTTTATCAAAGAAGGTGTTTACCATGAGTATGTTGAAGTTACCAAAAAAATGACTCATGTTGTGTTTTTTGGTGAAGGTCCCACCAAGACACGAATTACTGGCAAAAAGAATTTCATAGATGGAATTAACACTTATAACACCGCCACTGTTGCTGTTCAAGGAGATTACTTTGTTGCTATAAATATAGGATTTGAGAATTCAGCTGGACCTCACAAACATCAAGCAGTAGCCATAAGGGTTCAAGCAGACAAAACAATCTTTTACAGATGTTCAATGGATGGATATCAAGACACATTATATACTCACGCCTTGCGTCAATATTATCGTGATTGTACAATTTCAGGTACCATTGATTTTGTCTTTGGTGATGCAATAGCTGTTTTTCAAAACTGCACTTTCATTGTAAGAAAACCATTACAAAGTCAGCAATGCATCGTAACTGCACAAGGCAGAAAAGAGATCCACCAACCATCTGGTATAGTTATTCAAGATTGCTACATTGTGTCTGAAAATCATAATGTAAAACTCGAACACAAAGCATATCTCGCGCGTCCATGGAAGAATTTCTCAAGGACTATCTTCATGAATTCTTACATTGGTGATTTTATTCAGCCTGATGGCTATATGCCATGGCAAGGACCAAATGGTACTCTTACTGGCATGAATACTTGCTTTTATGCTGAGTATAATAATGTTGGCCCCGGTTCTGATAAATCAAAACGTGTAAAATGGCCCGGAGTTAAGGTTCTTAATTCAAAATCTGCAACTAATTTTTTACCATCTATGTTCTTTCGTGGAGATGATTGGATTAAGGTTACTAGAATTCCTTACTCCTCTGGTGAGAAACCCCCCAAGCAATAA 1782 0.362 MVEEDTKRRRRIIIISVSTFLLVAMVVAVTVGVNFNTSNDSNSENNNEKSHMASTIKAVKTFCKPTDYKKECEESLLANVGNTTDSRELIKLAFNITVGKIGEGIKKTNLLQEAEKEPRAKMALDTCKKLMDLSIGEFDRSLERIKKFDLNNLESFLMSLKVWLSGAVTYQETCIDAFENTTSDASNKMKTILTSSMHMTSNALAIISDLADNILNLNSTRDGRQLIDIDNYKGKYVSEQIFEHDDVNEVPSWVGDDSSVGVRRLLNVPQNKLKADAVVAIDGSGKFKSINDALKQVPKKNQKPFIVFIKEGVYHEYVEVTKKMTHVVFFGEGPTKTRITGKKNFIDGINTYNTATVAVQGDYFVAINIGFENSAGPHKHQAVAIRVQADKTIFYRCSMDGYQDTLYTHALRQYYRDCTISGTIDFVFGDAIAVFQNCTFIVRKPLQSQQCIVTAQGRKEIHQPSGIVIQDCYIVSENHNVKLEHKAYLARPWKNFSRTIFMNSYIGDFIQPDGYMPWQGPNGTLTGMNTCFYAEYNNVGPGSDKSKRVKWPGVKVLNSKSATNFLPSMFFRGDDWIKVTRIPYSSGEKPPKQ 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03991 593 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 212 IPR035513 -
Trre2g03991 593 Pfam Pectinesterase 276 574 IPR000070 GO:0030599|GO:0042545
Trre2g03991 593 NCBIfam pectinesterase inhibitor domain 52 210 IPR006501 GO:0004857
Trre2g03991 593 Pfam Plant invertase/pectin methylesterase inhibitor 58 206 IPR006501 GO:0004857
Trre2g03991 593 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 210 IPR035513 -
Trre2g03991 593 Gene3D - 270 588 IPR012334 -
Trre2g03991 593 FunFam Pectinesterase 55 211 - -
Trre2g03991 593 SUPERFAMILY Pectin lyase-like 274 586 IPR011050 -
Trre2g03991 593 FunFam Pectinesterase 270 588 - -
Trre2g03991 593 ProSitePatterns Pectinesterase signature 2. 420 429 IPR033131 -
Trre2g03991 593 PANTHER PECTINESTERASE 15 578 - -
Trre2g03991 593 CDD PMEI-like_3 61 211 - -
Trre2g03991 593 SMART PMEI_2 54 206 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03991 Trre-Chr2 47188304 47191739 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03991 3 587 Carbohydrate Esterase AT3G05610 47.643 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03991 K01051 - gmx:100794799 804.668