Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03983 ATGGGTACACAACATATAAACCCTAGTTTTCTTCCACTTCTACTAGTGCGCCATTTCTTATTGCAGGGTGTAGCGCCGTCGCCGAAGCTTAAAGCAGACATGGGTATCGATCTTAAAGCAGGAGGTAAGAGCAAGAAGTCCAAAAGAACAGCGCCAAAATCCAATGATATCTATGTCAAGCTTTTGGTCAAGCTTTATCGGTTCCTTGTTCGGAGAACTGGCAGCAATTTCAGTGCTGTTATCCTCAAGAGGTTGTTCATGAGCAAGGTTAACAAGCCTCCACTATCTTTGTCAAGATTGATCAAGTACACCAAGGGCAAGATGATATCCGTGGTGGTCGGTACTATAACAGATGATATCCGTGTTTATGAAGTTCCAGCCATCAAGGTTACATCACTCAGGTTTACTGAGACTGCAAGGGCAAGAATAGAGAAAGCCGGTGGTGAATGCTTGACATTCGATCAGTTGGCTCTTAGGGCCCCATTGGGACAAAACACGGTTCTTCTTAGAGGTCCAAAGAATGCTCGTGAAGCTGTGAAGCACTTTGGTCGTGCTCCTGGTGTCCCACACAGCCACACCAAGCCTTATGTGAGAGCAAAGGGTAGGAAGTTCGAGAAGGCTAGAGGAAAGAGGAACAGCCGTGGATTCAGAGTTTGA 657 0.4612 MGTQHINPSFLPLLLVRHFLLQGVAPSPKLKADMGIDLKAGGKSKKSKRTAPKSNDIYVKLLVKLYRFLVRRTGSNFSAVILKRLFMSKVNKPPLSLSRLIKYTKGKMISVVVGTITDDIRVYEVPAIKVTSLRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGRAPGVPHSHTKPYVRAKGRKFEKARGKRNSRGFRV 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03983 218 FunFam 60S ribosomal protein L18 34 218 - -
Trre2g03983 218 SUPERFAMILY Ribosomal proteins L15p and L18e 54 170 IPR036227 -
Trre2g03983 218 Pfam Ribosomal protein 60S L18 and 50S L18e 35 218 IPR021131 -
Trre2g03983 218 PANTHER 60S RIBOSOMAL PROTEIN L18 34 218 IPR000039 GO:0003735|GO:0005840|GO:0006412
Trre2g03983 218 Gene3D - 34 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03983 Trre-Chr2 46998397 46999877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03983 36 218 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 74.194 8.57e-96 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03983 K02883 - gmx:100791657 341.273