Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03978 ATGGGTCGTCTAGATGCAGCTGGTTCCAAGGGGAAGAAGAAGGGATTCATAACATTCACCATTGATTGCGCCAAACCAGTTGAAGACAAGATCATGGACATTGCTTCTCTCGAAAAGTTTCTTCAAGAGAGGATTAAAGTTGGTGGTAAACCTGGTGCTCTTGGTGATGCTGTTACTGTTTCACGTGAGAAGAGCAAGATCGCTGTTACTTCTGATAGCAACTTCTCCAAACGGTATCTCAAGTACTTAACTAAGAAGTATTTGAAGAAACACAATGTACGTGACTGGCTCAGAGTGATTGCTTCTAACAAAGACAGAAATGTTTACGAATTGAGGTACTTCAACATTGCTGAAAATGAAGGAGAGGAAGAAGATTAA 378 0.4074 MGRLDAAGSKGKKKGFITFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKPGALGDAVTVSREKSKIAVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03978 125 FunFam 60S ribosomal protein L22-2 5 125 - -
Trre2g03978 125 Pfam Ribosomal L22e protein family 18 123 IPR002671 GO:0003735|GO:0005840|GO:0006412
Trre2g03978 125 Gene3D - 6 125 IPR038526 -
Trre2g03978 125 PANTHER 60S RIBOSOMAL PROTEIN L22 7 125 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03978 Trre-Chr2 46908453 46909671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03978 1 125 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 83.200 8.29e-63 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03978 K02891 - nnu:104598935 211.846