Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03977 ATGGAGCAAGGGTTGAGAAAAGGACCATGGTCAAAACAAGAGGATGAAATATTAAAAGAATATGTAAAAATATATGGACCGAAAAAATGGAATGCATTACAAAGGTTAACTGGACTTCCTCGAGAAGGCAAAAGTTGTCGTCTAAGATGGCTTAATCATCTTAATCCAAATTTGAGAAAGGCAAAATTTAGTGAAGAAGAAAAACAGAAAATCCTTCAACTTCGTCAACTTGATGGCAAATGGTGTGAAATTGTTAAACAGTTTCCTGGAAAAACAGATAATGAGATAAAGAACTTCTACAATATTAATGAGAGAAAGAGACGTAAAATGGAGAATGGCAATGGTGAATGTCGGAAAAAGAAAAGGAATTATTTGTCACTCAACGATGAAATCATGAAACTACATGATAATGAGTTGAAAGACAATGGAGAAAATAGTCTTAGTGGTTTCATAAGCAACGAGCAAAAAGACATTTCTGACACACATGAAAGGGAACTCATGAAAGACTCATTCCATATTCCAATTATGCAACCTTCAAATATGTTATGCAATAATGTGGCAAGTACTTCTATAAGCAATAGTTCTTCCCCAACATTCATTGATAGGGGTGAAGCTCCTTTTATGCCAACTGGCATGGTATCAGATTTGCCTCCATTGATGGAAATTGAATCTCCACTTCCTTCATACACTTCTATAAGCAATAATTCTTCCCCAACATTTATTGATAGGGGTGAAACTTCTTTTACTTCTATGGACATGAAATCAAGTCTACCTCCACTTCCACTTCCACTTCAAGAAAGTATAGATTTTGAATCTCTTGAATCTCCACTAATTCATAAGTATCCTCCACTTCCACTTCGATCACCCGAGGAGATTCAACAAGAACAATTATTAGAACCAGATACTCCATCCAATAATGGTTTTTTGGTGGTTGGTGAAAATGGGAAGAAGCTAATTTCTTTGAAGAAAGATGAATCAAAAAATGAAGACTTAATAGATTTGTTGGATAGTTTAGGTTGGCTTGATGGTTATATTTTTTGA 1041 0.3477 MEQGLRKGPWSKQEDEILKEYVKIYGPKKWNALQRLTGLPREGKSCRLRWLNHLNPNLRKAKFSEEEKQKILQLRQLDGKWCEIVKQFPGKTDNEIKNFYNINERKRRKMENGNGECRKKKRNYLSLNDEIMKLHDNELKDNGENSLSGFISNEQKDISDTHERELMKDSFHIPIMQPSNMLCNNVASTSISNSSSPTFIDRGEAPFMPTGMVSDLPPLMEIESPLPSYTSISNNSSPTFIDRGETSFTSMDMKSSLPPLPLPLQESIDFESLESPLIHKYPPLPLRSPEEIQQEQLLEPDTPSNNGFLVVGENGKKLISLKKDESKNEDLIDLLDSLGWLDGYIF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03977 346 Gene3D - 61 129 - -
Trre2g03977 346 Pfam Myb-like DNA-binding domain 10 70 - -
Trre2g03977 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 58 IPR017930 -
Trre2g03977 346 CDD SANT 62 101 IPR001005 -
Trre2g03977 346 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 4 309 - -
Trre2g03977 346 Gene3D - 7 59 - -
Trre2g03977 346 ProSiteProfiles Myb-like domain profile. 2 54 IPR001005 -
Trre2g03977 346 SMART sant 6 56 IPR001005 -
Trre2g03977 346 SMART sant 59 106 IPR001005 -
Trre2g03977 346 SUPERFAMILY Homeodomain-like 4 100 IPR009057 -
Trre2g03977 346 CDD SANT 9 54 IPR001005 -
Trre2g03977 346 ProSiteProfiles Myb-like domain profile. 55 101 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03977 Trre-Chr2 46901840 46904680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03977 2 186 MYB Transcription Factor Family AT5G10280 38.542 1.84e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre2g03977 Myb_DNA-bind_6 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03977 K09422 - tpra:123888557 397.897