Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03959 ATGCCTGATAAAACAGTTTGCGAGAAGCATTACTTTCAAGCTAAGAAAAGAGCTGCTAATTCCGCCATGAGAGCTAATCTCAAGAAATCTAAACCTGATTCTGATGTTTATTTAGAAAGTAAGAGTGATGATTTTGATGCTTCACTCTCTGCTACTATTATCAATAATCGTTCTTCTTCCTCTTCTTCTGGGAAGAAGTTGTTTGATAAGGTTTCTAAGAATCAGTTTCGTTATACTCCGGAGGGACTTATTGGTTCATCTGCCGGTGGTAATACTTCGAAGCTTAGTGGTGGTGATGGTGATGTTTCTCCTGATGGTGTTGATGATGAGGATGCTATTATGTTAGAAGAGAATTGGGTCTCCAATGATGAACCGGCTGGTTCTGGTAATGATGATTCAGCTGGGAAAATGATGCGCACCAGCCTTGATGGGAATGCTGCTACTGAATATTCTGATGGAGCGTCGGGTTCTTCTCAAGAGAATGGCGGACAGACTTGTCATCAGTGCAGGAAGAGTGTTAGAGATAGAGTTACTTGGTGCCTTAAGTGTGATAGAAGAGGATATTGTGATAGCTGTATATCAACATGTTATTCTGACATTTCATTGGATGAAATTCAGAAGATATGTCCTGCATGCCGTGGTATATGCAATTGTAAAATTTGTTTACGTAGTGATAATTCAATAAAGGTTCGGATACGTGAGATACCTGTATTGGATAAATTACAGTATCTTCACGTGCTGCTGTCATCAGTGCTTCCTGTGGTAAAGCAGATCCACCACGATCAATGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCAAGGACAAAATTGAATGCAGATGAGCAGATGTGCTGCAATTTGTGTAGGATACCTATCACTGATTATCATCGACGTTGTCCAAGTTGTTCATATGATTTGTGCCTTATTTGTTGTCGAGATCTTAGGGAAGCTACTGTACATCAGAGTAAAGAACCTCAAGAACCTCAAACAGAGCATGCAAAAACTACTGAGCGAAACCTATTAAGCAAGTTTCCTCATTGGAGATCAAATGCGGATGGAAGTGTTCCATGCCCCCCTAAGGAGTATGGTGGTTGTGGTTATTCATCATTAAATTTAAGTCGGATTTTCAAGATGAATTGGGTAGCAAAATTGGGAAAAAATGTAGAGGAAATGGTTAGTGGATGCAGAATGAGTGATGTTGATGGTCCACCAGAAACCGGATTGAATGCTCTCAGACTTTGCCAATATTCTCAAAGAGAGGCTAGCAATGATAATTATCTTTATTGCCCAACATCTGAAGATCTGAAAACTGATGGGATTGGCATGTTCAGAATGCACTGGAAAACTGGTGAGCCCATTATTGTTAAGCAAGTATTTGATAGGTCATCCATGTCAAGCTGGGACCCATTGGTCATATGGAGAGGGATTCTAGAGACAACAGACGCGAATATGAAAGATGATAACAAAATGGTTAAGGCCATAGATTGCTCAGATGGATCTGAGATTGATATTGAGCTTGGTCAGTTCATGAAAGGATATTCTGAGGGGCGTATTCTTGAAAATGGTTGGCCACAAATATTGAAACTCAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTCTTTTGTATCAAAGACCAGACTTTATCAGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAGTTGCCTCATTACTCATTGCAGAATGATGTAGGACCCAAGATCTATATATCCTATGGGATTAGTGATGAACTTGGCAGAGGTGATTCTGTGACAAAACTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTCCATACAAGTGAAGTTAAGCTGAAGGACTGGCAGAGAACTAAAGTTGAAATGATGGAGAAAACTTATAAGGAATCTGAAGTGAAAGAATCCCATGGGGATCCAAATATATGTTCAAGAGGGATTTCGCCCGATTCATCTCTATGTACAAAAATTAATGGACTGGATTTGGAATCAGACCAGAAGGATTCAACTATGGATCAAGGGTTTGAAGTTTATTCCAGTGCTGGAGGGAATATGGTCAATTGTGAAATTCCATCAAGACAAAATGGGGACGTCTCTGAGATAACACATCCTGGAGTTCTTTGGGATGTTTTTCGGCGGCAGGATGTTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTCGGGAAGTCAGATGATATAGTAAGTGAATTTGTTACTTGGCGTCTCTATGATGGAGCTATTTTTCTTGACAGACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACCGTTCAGCTGGGTCTTGATTTCTTATCTCCTGAAAGCCTGGGGGAGGCTGTAAGATTGGCAGAGGAAGTTCGTCGTTTACCTAATGAACATGAAGCAAAGCTTCAAGTTTTGGAGGTTGGGAAAATATCTCTTTATGCAGCAAGTTCAGCAATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGCGGAGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAACTATGAAAAGATGTCTAAGCGGAGGCAGATCACTTGTGCTTGA 2721 0.4043 MPDKTVCEKHYFQAKKRAANSAMRANLKKSKPDSDVYLESKSDDFDASLSATIINNRSSSSSSGKKLFDKVSKNQFRYTPEGLIGSSAGGNTSKLSGGDGDVSPDGVDDEDAIMLEENWVSNDEPAGSGNDDSAGKMMRTSLDGNAATEYSDGASGSSQENGGQTCHQCRKSVRDRVTWCLKCDRRGYCDSCISTCYSDISLDEIQKICPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHHDQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLICCRDLREATVHQSKEPQEPQTEHAKTTERNLLSKFPHWRSNADGSVPCPPKEYGGCGYSSLNLSRIFKMNWVAKLGKNVEEMVSGCRMSDVDGPPETGLNALRLCQYSQREASNDNYLYCPTSEDLKTDGIGMFRMHWKTGEPIIVKQVFDRSSMSSWDPLVIWRGILETTDANMKDDNKMVKAIDCSDGSEIDIELGQFMKGYSEGRILENGWPQILKLKDWPSPSASEEFLLYQRPDFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTKLHFNMRDMVYLLVHTSEVKLKDWQRTKVEMMEKTYKESEVKESHGDPNICSRGISPDSSLCTKINGLDLESDQKDSTMDQGFEVYSSAGGNMVNCEIPSRQNGDVSEITHPGVLWDVFRRQDVPKVTEYLKMHWKEFGKSDDIVSEFVTWRLYDGAIFLDRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRRLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGGEIGYGDPNLTAMVSENYEKMSKRRQITCA 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03959 906 ProSiteProfiles JmjC domain profile. 542 836 IPR003347 -
Trre2g03959 906 MobiDBLite consensus disorder prediction 146 165 - -
Trre2g03959 906 Gene3D Cupin 430 845 - -
Trre2g03959 906 MobiDBLite consensus disorder prediction 80 98 - -
Trre2g03959 906 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 161 226 IPR018866 -
Trre2g03959 906 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 41 870 IPR045109 GO:0032454|GO:0033169
Trre2g03959 906 ProSiteProfiles Zinc finger RING-type profile. 166 213 IPR001841 -
Trre2g03959 906 SMART cupin_9 549 836 IPR003347 -
Trre2g03959 906 MobiDBLite consensus disorder prediction 119 139 - -
Trre2g03959 906 MobiDBLite consensus disorder prediction 80 105 - -
Trre2g03959 906 Pfam JmjC domain, hydroxylase 723 815 IPR003347 -
Trre2g03959 906 SUPERFAMILY Clavaminate synthase-like 451 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03959 Trre-Chr2 46603864 46609991 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre2g03959 JmjC 7e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03959 K15601 - gmx:100801287 1436.4