Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03958 ATGCCTGATAAAACAGTTTGCGAGAAGCATTACTTTCAAGCTAAGAAAAGAGCTGCTAATTCCGCCATGAGAGCTAATCTCAAGAAATCTAAACCTGATTCTGATGTTTATTTAGAAAGTAAGAGTGATGATTTTGATGCTTCACTCTCTGCTACTATTATCAATAATCGTTCTTCTTCCTCTTCTTCTGGGAAGAAGTTGTTTGATAAGGTTTCTAAGAATCAGTTTCGTTATACTCCGGAGGGACTTATTGGTTCATCTGCCGGTGGTAATACTTCGAAGCTTAGTGGTGGTGATGGTGATGTTTCTCCTGATGGTGTTGATGATGAGGATGCTATTATGTTAGAAGAGAATTGGGTCTCCAATGATGAACCGGCTGGTTCTGGTAATGATGATTCAGCTGGGAAAATGATGCGCACCAGCCTTGATGGGAATGCTGCTACTGAATATTCTGATGGAGCGTCGGGTTCTTCTCAAGAGAATGGCGGACAGACTTGTCATCAGTGCAGGAAGAGTGTTAGAGATAGAGTTACTTGGTGCCTTAAGTGTGATAGAAGAGGATATTGTGATAGCTGTATATCAACATGTTATTCTGACATTTCATTGGATGAAATTCAGAAGATATGTCCTGCATGCCGTGGTATATGCAATTGTAAAATTTGTTTACGTAGTGATAATTCAATAAAGGTTCGGATACGTGAGATACCTGTATTGGATAAATTACAGTATCTTCACGTGCTGCTGTCATCAGTGCTTCCTGTGGTAAAGCAGATCCACCACGATCAATGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCAAGGACAAAATTGAATGCAGATGAGCAGATGTGCTGCAATTTGTGTAGGATACCTATCACTGATTATCATCGACGTTGTCCAAGTTGTTCATATGATTTGTGCCTTATTTGTTGTCGAGATCTTAGGGAAGCTACTGTACATCAGAGTAAAGAACCTCAAGAACCTCAAACAGAGCATGCAAAAACTACTGAGCGAAACCTATTAAGCAAGTTTCCTCATTGGAGATCAAATGCGGATGGAAGTGTTCCATGCCCCCCTAAGGAGTATGGTGGTTGTGGTTATTCATCATTAAATTTAAGTCGGATTTTCAAGATGAATTGGGTAGCAAAATTGGGAAAAAATGTAGAGGAAATGGTTAGTGGATGCAGAATGAGTGATGTTGATGGTCCACCAGAAACCGGATTGAATGCTCTCAGACTTTGCCAATATTCTCAAAGAGAGGCTAGCAATGATAATTATCTTTATTGCCCAACATCTGAAGATCTGAAAACTGATGGGATTGGCATGTTCAGAATGCACTGGAAAACTGGTGAGCCCATTATTGTTAAGCAAGTATTTGATAGGTCATCCATGTCAAGCTGGGACCCATTGGTCATATGGAGAGGGATTCTAGAGACAACAGACGCGAATATGAAAGATGATAACAAAATGGTTAAGGCCATAGATTGCTCAGATGGATCTGAGATTGATATTGAGCTTGGTCAGTTCATGAAAGGATATTCTGAGGGGCGTATTCTTGAAAATGGTTGGCCACAAATATTGAAACTCAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTCTTTTGTATCAAAGACCAGACTTTATCAGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAGTTGCCTCATTACTCATTGCAGAATGATGTAGGACCCAAGATCTATATATCCTATGGGATTAGTGATGAACTTGGCAGAGGTGATTCTGTGACAAAACTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTCCATACAAGTGAAGTTAAGCTGAAGGACTGGCAGAGAACTAAAGTTGAAATGATGGAGAAAACTTATAAGGAATCTGAAGTGAAAGAATCCCATGGGGATCCAAATATATGTTCAAGAGGGATTTCGCCCGATTCATCTCTATGTACAAAAATTAATGGACTGGATTTGGAATCAGACCAGAAGGATTCAACTATGGATCAAGGGTTTGAAGTTTATTCCAGTGCTGGAGGGAATATGGTCAATTGTGAAATTCCATCAAGACAAAATGGGGACGTCTCTGAGATAACACATCCTGGAGTTCTTTGGGATGTTTTTCGGCGGCAGGATGTTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTCGGGAAGTCAGATGATATAGTTACTTGGCGTCTCTATGATGGAGCTATTTTTCTTGACAGACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACCGTTCAGCTGGGTCTTGATTTCTTATCTCCTGAAAGCCTGGGGGAGGCTGTAAGATTGGCAGAGGAAGTTCGTCGTTTACCTAATGAACATGAAGCAAAGCTTCAAGTTTTGGAGGTTGGGAAAATATCTCTTTATGCAGCAAGTTCAGCAATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGCGGAGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAACTATGAAAAGATGTCTAAGCGGAGGCAGATCACTTGTGCTTGA 2709 0.4049 MPDKTVCEKHYFQAKKRAANSAMRANLKKSKPDSDVYLESKSDDFDASLSATIINNRSSSSSSGKKLFDKVSKNQFRYTPEGLIGSSAGGNTSKLSGGDGDVSPDGVDDEDAIMLEENWVSNDEPAGSGNDDSAGKMMRTSLDGNAATEYSDGASGSSQENGGQTCHQCRKSVRDRVTWCLKCDRRGYCDSCISTCYSDISLDEIQKICPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHHDQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLICCRDLREATVHQSKEPQEPQTEHAKTTERNLLSKFPHWRSNADGSVPCPPKEYGGCGYSSLNLSRIFKMNWVAKLGKNVEEMVSGCRMSDVDGPPETGLNALRLCQYSQREASNDNYLYCPTSEDLKTDGIGMFRMHWKTGEPIIVKQVFDRSSMSSWDPLVIWRGILETTDANMKDDNKMVKAIDCSDGSEIDIELGQFMKGYSEGRILENGWPQILKLKDWPSPSASEEFLLYQRPDFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTKLHFNMRDMVYLLVHTSEVKLKDWQRTKVEMMEKTYKESEVKESHGDPNICSRGISPDSSLCTKINGLDLESDQKDSTMDQGFEVYSSAGGNMVNCEIPSRQNGDVSEITHPGVLWDVFRRQDVPKVTEYLKMHWKEFGKSDDIVTWRLYDGAIFLDRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRRLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGGEIGYGDPNLTAMVSENYEKMSKRRQITCA 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03958 902 MobiDBLite consensus disorder prediction 146 165 - -
Trre2g03958 902 ProSiteProfiles JmjC domain profile. 542 832 IPR003347 -
Trre2g03958 902 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 161 226 IPR018866 -
Trre2g03958 902 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 41 866 IPR045109 GO:0032454|GO:0033169
Trre2g03958 902 MobiDBLite consensus disorder prediction 80 98 - -
Trre2g03958 902 SMART cupin_9 549 832 IPR003347 -
Trre2g03958 902 Pfam JmjC domain, hydroxylase 723 811 IPR003347 -
Trre2g03958 902 ProSiteProfiles Zinc finger RING-type profile. 166 213 IPR001841 -
Trre2g03958 902 MobiDBLite consensus disorder prediction 119 139 - -
Trre2g03958 902 MobiDBLite consensus disorder prediction 80 105 - -
Trre2g03958 902 SUPERFAMILY Clavaminate synthase-like 451 842 - -
Trre2g03958 902 Gene3D Cupin 430 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03958 Trre-Chr2 46603864 46609991 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre2g03958 JmjC 1e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03958 K15601 - gmx:100801287 1427.15