Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03956 ATGGATCACGCAAGATCGAACAACATCGATGAGAATGTAGGAATTCCAGAAGATTTACGTTGCAAGAGATCAGACGGTAAACAATGGAGATGTACAGCTTTATCGATGCCTGATAAAACAGTTTGCGAGAAGCATTACTTTCAAGCTAAGAAAAGAGCTGCTAATTCCGCCATGAGAGCTAATCTCAAGAAATCTAAACCTGATTCTGATGTTTATTTAGAAAGTAAGAGTGATGATTTTGATGCTTCACTCTCTGCTACTATTATCAATAATCGTTCTTCTTCCTCTTCTTCTGGGAAGAAGTTGTTTGATAAGGTTTCTAAGAATCAGTTTCGTTATACTCCGGAGGGACTTATTGGTTCATCTGCCGGTGGTAATACTTCGAAGCTTAGTGGTGGTGATGGTGATGTTTCTCCTGATGGTGTTGATGATGAGGATGCTATTATGTTAGAAGAGAATTGGGTCTCCAATGATGAACCGGCTGGTTCTGGTAATGATGATTCAGCTGGGAAAATGATGCGCACCAGCCTTGATGGGAATGCTGCTACTGAATATTCTGATGGAGCGTCGGGTTCTTCTCAAGAGAATGGCGGACAGACTTGTCATCAGTGCAGGAAGAGTGTTAGAGATAGAGTTACTTGGTGCCTTAAGTGTGATAGAAGAGGATATTGTGATAGCTGTATATCAACATGTTATTCTGACATTTCATTGGATGAAATTCAGAAGATATGTCCTGCATGCCGTGGTATATGCAATTGTAAAATTTGTTTACGTAGTGATAATTCAATAAAGGTTCGGATACGTGAGATACCTGTATTGGATAAATTACAGTATCTTCACGTGCTGCTGTCATCAGTGCTTCCTGTGGTAAAGCAGATCCACCACGATCAATGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCAAGGACAAAATTGAATGCAGATGAGCAGATGTGCTGCAATTTGTGTAGGATACCTATCACTGATTATCATCGACGTTGTCCAAGTTGTTCATATGATTTGTGCCTTATTTGTTGTCGAGATCTTAGGGAAGCTACTGTACATCAGAGTAAAGAACCTCAAGAACCTCAAACAGAGCATGCAAAAACTACTGAGCGAAACCTATTAAGCAAGTTTCCTCATTGGAGATCAAATGCGGATGGAAGTGTTCCATGCCCCCCTAAGGAGTATGGTGGTTGTGGTTATTCATCATTAAATTTAAGTCGGATTTTCAAGATGAATTGGGTAGCAAAATTGGGAAAAAATGTAGAGGAAATGGTTAGTGGATGCAGAATGAGTGATGTTGATGGTCCACCAGAAACCGGATTGAATGCTCTCAGACTTTGCCAATATTCTCAAAGAGAGGCTAGCAATGATAATTATCTTTATTGCCCAACATCTGAAGATCTGAAAACTGATGGGATTGGCATGTTCAGAATGCACTGGAAAACTGGTGAGCCCATTATTGTTAAGCAAGTATTTGATAGGTCATCCATGTCAAGCTGGGACCCATTGGTCATATGGAGAGGGATTCTAGAGACAACAGACGCGAATATGAAAGATGATAACAAAATGGTTAAGGCCATAGATTGCTCAGATGGATCTGAGATTGATATTGAGCTTGGTCAGTTCATGAAAGGATATTCTGAGGGGCGTATTCTTGAAAATGGTTGGCCACAAATATTGAAACTCAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTCTTTTGTATCAAAGACCAGACTTTATCAGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAGTTGCCTCATTACTCATTGCAGAATGATGTAGGACCCAAGATCTATATATCCTATGGGATTAGTGATGAACTTGGCAGAGGTGATTCTGTGACAAAACTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTCCATACAAGTGAAGTTAAGCTGAAGGACTGGCAGAGAACTAAAGTTGAAATGATGGAGAAAACTTATAAGGAATCTGAAGTGAAAGAATCCCATGGGGATCCAAATATATGTTCAAGAGGGATTTCGCCCGATTCATCTCTATGTACAAAAATTAATGGACTGGATTTGGAATCAGACCAGAAGGATTCAACTATGGATCAAGGGTTTGAAGTTTATTCCAGTGCTGGAGGGAATATGGTCAATTGTGAAATTCCATCAAGACAAAATGGGGACGTCTCTGAGATAACACATCCTGGAGTTCTTTGGGATGTTTTTCGGCGGCAGGATGTTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTCGGGAAGTCAGATGATATAGTTACTTGGCGTCTCTATGATGGAGCTATTTTTCTTGACAGACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACCGTTCAGCTGGGTCTTGATTTCTTATCTCCTGAAAGCCTGGGGGAGGCTGTAAGATTGGCAGAGGAAGTTCGTCGTTTACCTAATGAACATGAAGCAAAGCTTCAAGTTTTGGAGGTTGGGAAAATATCTCTTTATGCAGCAAGTTCAGCAATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGCGGAGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAACTATGAAAAGATGTCTAAGCGGAGGCAGATCACTTGTGCTTGA 2814 0.4051 MDHARSNNIDENVGIPEDLRCKRSDGKQWRCTALSMPDKTVCEKHYFQAKKRAANSAMRANLKKSKPDSDVYLESKSDDFDASLSATIINNRSSSSSSGKKLFDKVSKNQFRYTPEGLIGSSAGGNTSKLSGGDGDVSPDGVDDEDAIMLEENWVSNDEPAGSGNDDSAGKMMRTSLDGNAATEYSDGASGSSQENGGQTCHQCRKSVRDRVTWCLKCDRRGYCDSCISTCYSDISLDEIQKICPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHHDQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLICCRDLREATVHQSKEPQEPQTEHAKTTERNLLSKFPHWRSNADGSVPCPPKEYGGCGYSSLNLSRIFKMNWVAKLGKNVEEMVSGCRMSDVDGPPETGLNALRLCQYSQREASNDNYLYCPTSEDLKTDGIGMFRMHWKTGEPIIVKQVFDRSSMSSWDPLVIWRGILETTDANMKDDNKMVKAIDCSDGSEIDIELGQFMKGYSEGRILENGWPQILKLKDWPSPSASEEFLLYQRPDFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTKLHFNMRDMVYLLVHTSEVKLKDWQRTKVEMMEKTYKESEVKESHGDPNICSRGISPDSSLCTKINGLDLESDQKDSTMDQGFEVYSSAGGNMVNCEIPSRQNGDVSEITHPGVLWDVFRRQDVPKVTEYLKMHWKEFGKSDDIVTWRLYDGAIFLDRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRRLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGGEIGYGDPNLTAMVSENYEKMSKRRQITCA 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03956 937 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 196 261 IPR018866 -
Trre2g03956 937 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 17 901 IPR045109 GO:0032454|GO:0033169
Trre2g03956 937 SUPERFAMILY Clavaminate synthase-like 486 877 - -
Trre2g03956 937 MobiDBLite consensus disorder prediction 115 140 - -
Trre2g03956 937 MobiDBLite consensus disorder prediction 181 200 - -
Trre2g03956 937 Gene3D Cupin 465 876 - -
Trre2g03956 937 MobiDBLite consensus disorder prediction 154 174 - -
Trre2g03956 937 ProSiteProfiles JmjC domain profile. 577 867 IPR003347 -
Trre2g03956 937 MobiDBLite consensus disorder prediction 115 133 - -
Trre2g03956 937 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Trre2g03956 937 ProSiteProfiles Zinc finger RING-type profile. 201 248 IPR001841 -
Trre2g03956 937 SMART cupin_9 584 867 IPR003347 -
Trre2g03956 937 Pfam JmjC domain, hydroxylase 758 846 IPR003347 -
Trre2g03956 937 Pfam WRC 16 56 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03956 Trre-Chr2 46603864 46610096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03956 16 56 GRF Transcription Factor Family AT3G13960 48.780 7.71e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre2g03956 JmjC 1.1e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03956 K15601 - gmx:100801287 1483