Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03954 ATGTCAAACATCACATGTTGTGATAGTGAGAGCTTCTCTACAGAGAATAACAGAGAAGATGGAGTTAAACAGCTACAACAAACTGAAATACTTGGTCAATTTCATAGTCCACATTCTCATACTTCAACAACAACAACAACAAATAATAACAGCAATGGTTCAAACACTAATTTACAACCACCTCTTAAGAGGAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCACTATCACCAACAACACTAATGGCTACAAACAGATTTGTATGTGAAATATGTAACAAAGGTTTTCAAAGAGACCAAAACCTTCAATTGCACCGAAGAGGACACAATTTACCATGGAAGCTGAAACAGAGAACAAGTAATGAAATTATAAAGAGAGTTTATGTTTGTCCTGAACCATCATGTGTTCATCATAATCCTGCAAGAGCACTTGGTGATCTTACTGGTATTAAAAAGCACTTTTGTAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAATTTGTGGTACAAGGGAATACAAATGTGACTGTGGAACCATATTTTCAAGAAGAGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCTGAAGAAAACAACAAAGCAAACGAAGTATCAAACTTGCAACACCAACACATACCAAATCTTGTTTCTTCATTATTACCTATAAACCCTCCACAAATAGTTGGAAATTCATCAGAAATATTCAACAATATTCATTCAGATCACAAGCATCCATTATCATCACCTCATGATCTCATGTCAGTTCCTGCAAAACCCTTCAACAATAACATATTCACTACAAGTCTTTCATCTTCAACTTCATCTCCTTCTCTTCAACTCAGTTCAAATAATTCACTCAACAATATCTTGGAAGAAAATGGTTCACTCCATTTATCTGCAGCTACTTCACCTCACATGTCAGCTACTGCATTGCTTCAAAAAGCTGCTCAAATGGGTGCAACCGTGAGTAATAATAATGCTAGTATGAGTATGCCGGAAAAAACCGTTGCGGAAAACATGATGGCGCCGCCGTTGTTCGGTGTGGCGCAACAACAAGGACATGCTTTCATGAATCACTACATGCAGCAGCAGCAGCAGCAGCAGCAACAAGCTCAGTATAATAATAATAATAATAATTTCAATGCAAATGGGATGATAAATGGAGGAGGAGGTGTTAATGGATCAATGAATGGAGTTGATATGTTTAATGCTATATTGGATCAAAGTAAAGCTTTATCCAAGATTATAGAACAGAATAATCAAACTCAAAGCACCATTAATAGTGTTGGAGGAGTAGGAGTAGTAGGAGGGGGTGCATCAAGTAATAATAATGTTGTTATGAACATTGGTGGAAGTAAAGGAAGTGGTGGAGATGTAATGACATTGGATTTGTTGGGGATAGGAGGGGGAGGTGCACATGGTAATTTCTATGGAGGAGGGGGTACACAACAACAACAGGCAGAAAGTGCTGCTGCAGCAGCTGATGAAGTTTGGAGAAATTGGTCAACAAAGAATGGAGGATTTGAATCTTTTTCAGCAACAAGCAACATTTGA 1629 0.3788 MSNITCCDSESFSTENNREDGVKQLQQTEILGQFHSPHSHTSTTTTTNNNSNGSNTNLQPPLKRKRNLPGNPDPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSNEIIKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEVSNLQHQHIPNLVSSLLPINPPQIVGNSSEIFNNIHSDHKHPLSSPHDLMSVPAKPFNNNIFTTSLSSSTSSPSLQLSSNNSLNNILEENGSLHLSAATSPHMSATALLQKAAQMGATVSNNNASMSMPEKTVAENMMAPPLFGVAQQQGHAFMNHYMQQQQQQQQQAQYNNNNNNFNANGMINGGGGVNGSMNGVDMFNAILDQSKALSKIIEQNNQTQSTINSVGGVGVVGGGASSNNNVVMNIGGSKGSGGDVMTLDLLGIGGGGAHGNFYGGGGTQQQQAESAAAAADEVWRNWSTKNGGFESFSATSNI 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03954 542 MobiDBLite consensus disorder prediction 1 20 - -
Trre2g03954 542 FunFam protein indeterminate-domain 12-like 71 139 - -
Trre2g03954 542 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Trre2g03954 542 MobiDBLite consensus disorder prediction 35 62 - -
Trre2g03954 542 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Trre2g03954 542 SMART c2h2final6 168 188 IPR013087 -
Trre2g03954 542 SMART c2h2final6 133 163 IPR013087 -
Trre2g03954 542 SMART c2h2final6 92 114 IPR013087 -
Trre2g03954 542 Pfam Zinc finger, C2H2 type 92 114 IPR013087 -
Trre2g03954 542 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 507 IPR031140 -
Trre2g03954 542 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Trre2g03954 542 Gene3D Classic Zinc Finger 92 136 - -
Trre2g03954 542 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Trre2g03954 542 MobiDBLite consensus disorder prediction 35 75 - -
Trre2g03954 542 Gene3D Classic Zinc Finger 147 227 - -
Trre2g03954 542 Coils Coil 388 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03954 Trre-Chr2 46597696 46601099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03954 42 348 IDZ Gene Family AT3G50700 53.371 1.38e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g03954 zf-C2H2 0.0055 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03954 - - gmx:100785295 599.356