Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03950 ATGAACGGTGGTGAAGGAGACAAAACGTTGCCAATAGCAAATGTTGGTAGAATAATGAAACAAAATCTTCCTCCCAATGCAAAGATCTCAAAAGAAAGCAAACAACTGATGCAAGAATGTGCGACAGAGTTCATAAGTTTTGTGACAGGTGAAGCATCTGACAAGTGTCACAAAGAGAATCGAAAGACTGTTAGTGGAGATGATATCTGTTGGGCTCTGTGTTCATTAGGGTTTGATAACTATGCTGAAGCCATTGGAAGGTATTTGTATAAATACAGACAAGCTGAACTTGTTAAATTGAATCAGAACAAACTTGAGACAGCAAAAGACAAAGTTTGA 339 0.3776 MNGGEGDKTLPIANVGRIMKQNLPPNAKISKESKQLMQECATEFISFVTGEASDKCHKENRKTVSGDDICWALCSLGFDNYAEAIGRYLYKYRQAELVKLNQNKLETAKDKV 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03950 112 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre2g03950 112 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Trre2g03950 112 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Trre2g03950 112 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Trre2g03950 112 SUPERFAMILY Histone-fold 7 99 IPR009072 GO:0046982
Trre2g03950 112 Gene3D Histone, subunit A 1 112 IPR009072 GO:0046982
Trre2g03950 112 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 98 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre2g03950 112 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 73 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03950 Trre-Chr2 46370821 46371159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03950 7 104 CCAAT-HAP3 Transcription Factor Family AT1G09030 72.449 1.28e-51 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre2g03950 CBFD_NFYB_HMF 8.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03950 K08065 - pvy:116118424 174.866