Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03947 ATGGCACCGACAAGGAAATCTAGAAGTGTGAATAAGCGATTTGCAAACGACGTTTCTCCAGAGAAAGATGGAGTTAGCTCAAATAAAAACAAACACCGGAAGAAGAAATTGTCTGATAAATTGGGATCTCAGTGGAGCAAGGAGGAGCTACAGCGATTCTATGAGGCATACAGAAAGTATGGGAAAGATTGGAAGAAGGTTGCTGCTGCTGTACGTAACAGATCCATTGAAATGGTTGAAGCTCTTTACAATATGAATCGGGCATACCTATCTCTACCAGAGGGCATGGCTTCTGTTGTAGGTCTCATTGCAATGATGACAGATCATTATAATGTCCTGGAAGAGAGTGACAGTGAAAGGGAGAGCAATGATGCACCAGGATCTCGAAAACCTGTGAAACGAAAGCGTGAAAAAGTTCAGCTTAGTGTCTCAAAGGATCCTGTCCAGTCTCAGTCTGTAACTTCCGGTGATGGTTGCCTCTCTCTACTGAAGAAAAGACGCATTGATGGTATCCAGCCTCGTGCTGTTGGGAAAAGGACACCCCGAGTCCCAGTTTACCACTCTTACAAGAAAGATGAAAGGGAGAATTATGTTTCACCTAATAAAAGAAGCTTGAAGTCCACTGATGATGCTAATGATAACGAAGTTGCACATGTAGCTTTGGCATTATCCAGGGCTGCACAAAGAGGAGGCTCTCCCCTTATTTCTCAAACACGACATAGGAGAGCAGAGCAGAAGTCCTCTCCTGCTCAGAGCTTGGAAAGAATGCACCAAATGTCAGAGACGGCCCGTGCCAAGTTTCGCGATGTTGTGGATGAAGAGTTTTTGGAAGGTAGTCTAGAAAGCAGGGGAGCTGAAAATGGAGAATATGTTAGAGATACTAGTTCTTTGATGGATATGGAAGGAATGAGCAACACTAGAGTTCTTCTGAAGGGAGGAAAATTTTACAAAAAGAAAGAGAGAGTGGACAATGTTGGAAATTACCAACTTGATGATGGAGGAGAAGCATGCAGCGGTACTGAAGAAGGACTTAGTTTTAGTTCTTTGAAGGAAAAGAATATGGAGGTTACTAATGAAAAGCTCGAGCAATTCTCTCCAAGTCAGCGGAAAAGAAGCAAAAAACTCTTCTGTGGAGATGAAATCCACGCCTTGAATGCTTTGCAAACCTTAGCCGATCTATCTCTAATGATGCCGACATCTAAAGGAGAATTTGAATCATCTATCCAGTTGAAGGGAGACCAAATGAATGTTGATAAAGATGATAAGTCTGCTTTACCTGAAGCAACATCAACAAGTCATAAGAGAAATAAAGTTAAACCTCGCGCGGTTCCTGGAGCTGACACTTCAATGTCCAAAAAATCTAAACTCGGAAAGGATATATCAAATGATAACAATGTTCCCTCTGAATCAAAAGACCAGATTCCATTTGCTGATAGAACATGGAAAAGAAAGCAGAAGTCCATGAAAGCTGTAGATGATGAGAACAAACCGATGATTAAAGGAAAACACACTGATCAGGTTTTTGCATCACCAAAACAATCGAAGATGGGTTTAGCAGTATCATCAACCACTGAAACTCCACTTTTGAGTGAAGTCAGTTCGCCAACTAAACAAAGAAGTAGACGCAAGATGAATTTTCAGAGACCATCCATGATTAAAGAGAGGTCTTCTGAGAATGTATTGAAAAGTCAACCTAATAAGCACTCTACTGAAAAGGAAAAGCTTTCTAGTTGCTTGTCATCTTATTTGGTTCGCAGATGGTTTACTTTTGAATGGTTTTATAGTGCACTTGATTATCCATGGTTTGCCAAAAGAGAATTTGTGGAGTACTTAAACCATGTTGGACTAGGGAATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCTCTTGGCAAACCACGGAGGTTCTCTGAACACTTTTTACATGAGGAAAGACAAAAACTTGAACAGTATCGAGACTCAGTGAGGAAACATTATTCTGAGCTGCGGGCTGGTATAAGAGATGGACTTCCGACAGATTTGGCGAGACCATTATATGTTGGACAACGAGTAATTGCCATTCACCCCAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACAGTTGACCATGACAAGTGTCGGATTCAGTTCGACCGTCCTGAGTTAGGAGTTGAATTCATCATGGACATTGATTGCATGCCTTCAAATCCATTCGATAATATGCCAGAAGCTTTGAGGAGGCAGATTGGTGCCAGAAAAGCCTCTTTTATGACTACAGAACCACAGATTAATGGAAATTCAAGTTTTGGGGGATGTGAAGTGCACTCATCACCTGTAAAGGGGGATGCCAACCATGTCACTTCCCAGGCCAATATTGATAACCTCTGTGCACTAGCTGCTTGTGCTCAACCGTGTAAAGTGATGCAACATCAAGCTAAAGAAGCTGATATACATGCACTTTCTGAAGTAAAGCGTGCTCTTGATAAAAAGGAGACAGTGTTAACAGAGCTCCGTAATGCAAATAGTGGCATATTGGAAAACCAAAATGGAATAGAATGTTTAAAAGATTCCGAAGGTTTCAAGAAGCATTATGCCACGGTTTCTGATACCATGCTTCAATTGAGGCAACGTAATACCTACACAGACAACTCTCTGCCACCATGGATGAAGCCCAGAGCAAACTTCGAAGTTCATGATGAACTTCCCAGTGTGTTGGATAGTTCTATGTCACAAGAGTCTAGGTCAAATGTCATTGAAATCATTAAAGGATCCAGGCTACGGGCACATGCAATGCTGGATGCTGCATTTCAGGCATGGGGTCAAGCTACAAAGGAAGGTAAAGATGCTATTTCGAAGATTGGGCAGGCATTGGATTCTATTGATTATCAGCAGTTGTCCTCCAAGTACAGGTTGCCTGTGATAAGGTCGCTAGATCAAGTGAATGGTAGTTTTTATCATCATAATCAGTCAACTTCCAGAGCATCAGAGCCTTTACTTAATGATGCATCTGGTCCAAAACTGCATAAAGATTCTGAACAAGTTGATATTGAAATACCGTCGGAGCTCATCGCTTCCTGTGTTGCTACATTAACCATGATACAGAGTTGTACTGAACGGCAATACCCTCCAGCGGATGTGGCCCGGATATTAGATTCTGCCGTTACCAGCCTGCAACCGAGCGATCCTCGAAACCTTCCTATTTACAGGGAAATTCAAATGTGCATGGGAAGAATTAAAACCCAGATTTTAGCTCTCATCCCTACTTAG 3261 0.4186 MAPTRKSRSVNKRFANDVSPEKDGVSSNKNKHRKKKLSDKLGSQWSKEELQRFYEAYRKYGKDWKKVAAAVRNRSIEMVEALYNMNRAYLSLPEGMASVVGLIAMMTDHYNVLEESDSERESNDAPGSRKPVKRKREKVQLSVSKDPVQSQSVTSGDGCLSLLKKRRIDGIQPRAVGKRTPRVPVYHSYKKDERENYVSPNKRSLKSTDDANDNEVAHVALALSRAAQRGGSPLISQTRHRRAEQKSSPAQSLERMHQMSETARAKFRDVVDEEFLEGSLESRGAENGEYVRDTSSLMDMEGMSNTRVLLKGGKFYKKKERVDNVGNYQLDDGGEACSGTEEGLSFSSLKEKNMEVTNEKLEQFSPSQRKRSKKLFCGDEIHALNALQTLADLSLMMPTSKGEFESSIQLKGDQMNVDKDDKSALPEATSTSHKRNKVKPRAVPGADTSMSKKSKLGKDISNDNNVPSESKDQIPFADRTWKRKQKSMKAVDDENKPMIKGKHTDQVFASPKQSKMGLAVSSTTETPLLSEVSSPTKQRSRRKMNFQRPSMIKERSSENVLKSQPNKHSTEKEKLSSCLSSYLVRRWFTFEWFYSALDYPWFAKREFVEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLHEERQKLEQYRDSVRKHYSELRAGIRDGLPTDLARPLYVGQRVIAIHPKTREIHDGSVLTVDHDKCRIQFDRPELGVEFIMDIDCMPSNPFDNMPEALRRQIGARKASFMTTEPQINGNSSFGGCEVHSSPVKGDANHVTSQANIDNLCALAACAQPCKVMQHQAKEADIHALSEVKRALDKKETVLTELRNANSGILENQNGIECLKDSEGFKKHYATVSDTMLQLRQRNTYTDNSLPPWMKPRANFEVHDELPSVLDSSMSQESRSNVIEIIKGSRLRAHAMLDAAFQAWGQATKEGKDAISKIGQALDSIDYQQLSSKYRLPVIRSLDQVNGSFYHHNQSTSRASEPLLNDASGPKLHKDSEQVDIEIPSELIASCVATLTMIQSCTERQYPPADVARILDSAVTSLQPSDPRNLPIYREIQMCMGRIKTQILALIPT 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03947 1086 Pfam DIRP 592 693 IPR033471 -
Trre2g03947 1086 Pfam Myb-like DNA-binding domain 43 80 IPR001005 -
Trre2g03947 1086 Gene3D - 4 98 - -
Trre2g03947 1086 SMART DIRP_2 593 694 IPR033471 -
Trre2g03947 1086 MobiDBLite consensus disorder prediction 550 564 - -
Trre2g03947 1086 MobiDBLite consensus disorder prediction 185 212 - -
Trre2g03947 1086 MobiDBLite consensus disorder prediction 475 495 - -
Trre2g03947 1086 ProSiteProfiles Myb-like domain profile. 43 75 IPR001005 -
Trre2g03947 1086 MobiDBLite consensus disorder prediction 227 255 - -
Trre2g03947 1086 PANTHER LIN-9 1 1086 IPR010561 GO:0006351|GO:0017053
Trre2g03947 1086 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 75 IPR017930 -
Trre2g03947 1086 MobiDBLite consensus disorder prediction 1 42 - -
Trre2g03947 1086 ProSiteProfiles SANT domain profile. 40 75 IPR017884 -
Trre2g03947 1086 Coils Coil 645 665 - -
Trre2g03947 1086 CDD SANT 45 79 IPR001005 -
Trre2g03947 1086 MobiDBLite consensus disorder prediction 172 212 - -
Trre2g03947 1086 MobiDBLite consensus disorder prediction 985 1004 - -
Trre2g03947 1086 MobiDBLite consensus disorder prediction 406 495 - -
Trre2g03947 1086 MobiDBLite consensus disorder prediction 414 434 - -
Trre2g03947 1086 SUPERFAMILY Homeodomain-like 39 88 IPR009057 -
Trre2g03947 1086 MobiDBLite consensus disorder prediction 511 570 - -
Trre2g03947 1086 MobiDBLite consensus disorder prediction 114 156 - -
Trre2g03947 1086 MobiDBLite consensus disorder prediction 10 28 - -
Trre2g03947 1086 MobiDBLite consensus disorder prediction 511 535 - -
Trre2g03947 1086 Coils Coil 818 838 - -
Trre2g03947 1086 SMART sant 41 89 IPR001005 -
Trre2g03947 1086 MobiDBLite consensus disorder prediction 114 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03947 Trre-Chr2 46304840 46320750 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre2g03947 DIRP 2.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03947 - - gmx:100789533 1575.07