Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03923 ATGGTTATTCATATTTTCAGACCAAGATTCACCCTGCATACAAGAATGGATCCTCAAGGTCATGGCCAAAACCCATCTATGGGAGTTGTTGGCAGTGGACAAATGGCCACATATGGTTCTAATCCGTACCAGCCCAACCATTTAACTGGGTCCGCTGGGATGGTTGTTCCCAATGTGGGGAATATTCAACCTGGTGGTCAACCAGATGGAACTCAGCTCGGACAACACCAGCTTGCTTATCAGCATATTCATCAGCAACAACAACAGCAGCAGCAGCAACAGCTCCAGGCCTTTTGGGGAAATCAGTATCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGCCTTCCTCTGGCGAGGATCAAGAAGATAATGAAGGCTGATGAGGATGTGAAGATGATATCAGCTGAGGCGCCGGTTGTGTTTGCTAGGGCATGCGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACACTTCAAAAGAATGATATTGCAGCTGCCATCACAGGAACTGATATCTTCGATTTCTTGGTTGACATTGTTCCTCGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATACCAAGAGGACCAATGCCTGTTGGAGGACCTGCTGATGGAATTCCTTATTGCTATATGCCGCCTCAAAATGCACAGCAAGCTGGAAATCCTGGTCTCATGATGCATAATCCAAACATGTATGCTCCGCAGTCTCATCCATACATGGCACCTCAAATGTGGCCTCAACCGTCAGAGCAACAACCATCGCCTTCAGATCAGTAG 816 0.4608 MVIHIFRPRFTLHTRMDPQGHGQNPSMGVVGSGQMATYGSNPYQPNHLTGSAGMVVPNVGNIQPGGQPDGTQLGQHQLAYQHIHQQQQQQQQQQLQAFWGNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITGTDIFDFLVDIVPREDLKDEVLASIPRGPMPVGGPADGIPYCYMPPQNAQQAGNPGLMMHNPNMYAPQSHPYMAPQMWPQPSEQQPSPSDQ 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03923 271 FunFam Nuclear transcription factor Y subunit gamma 82 194 - -
Trre2g03923 271 MobiDBLite consensus disorder prediction 248 271 - -
Trre2g03923 271 Gene3D Histone, subunit A 78 194 IPR009072 GO:0046982
Trre2g03923 271 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 81 227 - -
Trre2g03923 271 Pfam Core histone H2A/H2B/H3/H4 82 179 IPR007125 GO:0003677
Trre2g03923 271 SUPERFAMILY Histone-fold 83 188 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03923 Trre-Chr2 45847366 45851293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03923 16 258 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.525 1.08e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre2g03923 Histone 3.4e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03923 K08066 - gmx:100527803 358.221