Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03912 ATGGGTGAAGTGAATCCGTGTAAAAAATTAGCAGACAGGTATCTGAAGCGCGAAGTTCTCGGAGAAGGTACCTATGGTGTCGTTTACAAAGCCATTGATACCCAGACAGGACAAATGGTTGCAATTAAAAAGATTCGGAAAAGGATTGATGAGCCGTTAGACGGGGTCAATTTCACAGCTCTTAGAGAAATTAAACTTCTCAAAGAGCTCAAACATCCAAACATTGTTGATTTGATTCATGTATTCCAATATAAGCAGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGATCTTGAAGCTGTCATAAGAGACCGAAACATTTTCCTTTCTCCGGCTGATATTAAATCTTACCTTCTAATGATACTAAAAGGTCTTGCTTATTGTCACAAAAAATGGGTTTTGCATAGGGATGTGAAACCAAACAACTTGTTGATAGGACAAAATGGACAGCTGAAACTTGCAGATTTTGGTTTATCACAGATATTTGGAGACCCAGATCACGAGTTCGCTGATCAGGCATTTGCTCGGTGGTACAGAGCGCCTGAGCTATTATTTGGTGCCAAGAAGTACGGTTCAGGGGTAGATGTTTGGGCTGCAGCTTGTGTATTTGCTGAACTTCTTCTTCGTAAACCCTTTTTGGAGGGTTCATCCGATACGCATCAAACACGGAAGATTTTCGCAGCATTTGGAACCCCATCACCTTCTCAGTGGCCTGATATGATGTGCCTTAAATATTATGTTTAA 747 0.4056 MGEVNPCKKLADRYLKREVLGEGTYGVVYKAIDTQTGQMVAIKKIRKRIDEPLDGVNFTALREIKLLKELKHPNIVDLIHVFQYKQNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLLMILKGLAYCHKKWVLHRDVKPNNLLIGQNGQLKLADFGLSQIFGDPDHEFADQAFARWYRAPELLFGAKKYGSGVDVWAAACVFAELLLRKPFLEGSSDTHQTRKIFAAFGTPSPSQWPDMMCLKYYV 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03912 248 FunFam Cyclin-dependent kinase D-1 5 96 - -
Trre2g03912 248 ProSiteProfiles Protein kinase domain profile. 14 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03912 248 PANTHER CELL DIVISION PROTEIN KINASE 12 240 - -
Trre2g03912 248 SUPERFAMILY Protein kinase-like (PK-like) 9 247 IPR011009 -
Trre2g03912 248 SMART serkin_6 14 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03912 248 FunFam Mitogen-activated protein kinase 95 247 - -
Trre2g03912 248 Gene3D Phosphorylase Kinase; domain 1 5 96 - -
Trre2g03912 248 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Trre2g03912 248 Gene3D Transferase(Phosphotransferase) domain 1 97 248 - -
Trre2g03912 248 Pfam Protein kinase domain 16 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03912 248 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Trre2g03912 248 PIRSF ILK 8 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03912 Trre-Chr2 45706994 45710253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03912 8 248 Core Cell Cycle Gene Families AT1G73690 73.859 1.78e-132 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Trre2g03912 Pkinase 4.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03912 K02202 - mnt:21388634 400.208