LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g03908	ATGAAAATTTATCAAAATGACAGAACTACCCCTCTCTGCTTTCTCTTCATCTTCATCCTTTTCTCCGGCCTCGTCCCGTTCACCGGAGCACAGTCCGTCAACGACAACACAAACGACAACTATTACAACCGTGTAAGTCCTTCCATGGCAATAATAATAGTTATTCTCATCGCTGCTCTTTTTCTGATGGGATTCTTCTCGCTCTACATTCGTCGTTGTGCCGATTCACCTTCCAACAGTATCCGAAACATGGCAGGTATACCTGGAAGGTCACGACGCGCGGCGCGTGGTCTTGACGCTTCGATACTCGAGACTTTTCCGATATTTGAATACTCGGTGGTGAAGATTCATAAAATCGGAAAAGGTGCGTTGGAATGTGCTGTTTGTTTGAACGAGTTTGAAGAGACTGAAACGCTGCGTTTGATTCCAAAGTGTGATCACGTGTTTCATCCTGAGTGTATCGATGAGTGGCTTGGTTCTCATACCACTTGCCCGGTTTGCAGAGCTAATTTAGTTCCGCAACCGGGTGAATCGGTTCACGGAGTTCCGGTTTTTAATACTGAACCGGAAGATCTAGAGGCACAAAATGACGTTGTTGAATCAATTCCAGAACATCAAAATGAAGAGGGCGCGGTTAAAGAGTCAACTCAGCCACAAGTGTTGAGTTTAAGCAACACGTTGAACCGAAACCGGACAAGAGGTTCGCAATCTGGTCGGCCTCGTTGGTTTTCGCGGTCTCACTCGACCGGTCATTCAGTGGTTCAACCGGGTGAGAATACTGAAAGGTTTACTTTAAGGCTGCCGGTGGAAGTGAGGAAACAAATATTACAAAACCCGGAATTGCATCGGGCTAGAAGCTTGGTTGTGTTGCCAAGAGAAACTAGTTCACGACGTGGTTATCGAACCGGTGGCGGGGAAGGAAGTAGTAGAGGGAAATCTGTAAGGAGGTTGGACCGGGGTTTACTATCAGACCGGTGGGTTTTCACCATGGCACCTCCTTTCCTTGTAAGAGCATCGTCGATTAGGTCACCGAGGGTAGGCAATAGCGCCGGAGAAGGTACCTCCGGTTCAACAGCTACAGCAACGATTGTTGACTCGCCGCGCCCTCCAGTTTAA	1116	0.4785	MKIYQNDRTTPLCFLFIFILFSGLVPFTGAQSVNDNTNDNYYNRVSPSMAIIIVILIAALFLMGFFSLYIRRCADSPSNSIRNMAGIPGRSRRAARGLDASILETFPIFEYSVVKIHKIGKGALECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPQPGESVHGVPVFNTEPEDLEAQNDVVESIPEHQNEEGAVKESTQPQVLSLSNTLNRNRTRGSQSGRPRWFSRSHSTGHSVVQPGENTERFTLRLPVEVRKQILQNPELHRARSLVVLPRETSSRRGYRTGGGEGSSRGKSVRRLDRGLLSDRWVFTMAPPFLVRASSIRSPRVGNSAGEGTSGSTATATIVDSPRPPV	371

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g03908	371	MobiDBLite	consensus disorder prediction	205	255	-	-
	Trre2g03908	371	MobiDBLite	consensus disorder prediction	344	371	-	-
	Trre2g03908	371	ProSiteProfiles	Zinc finger RING-type profile.	126	168	IPR001841	-
	Trre2g03908	371	MobiDBLite	consensus disorder prediction	294	313	-	-
	Trre2g03908	371	SUPERFAMILY	RING/U-box	121	175	-	-
	Trre2g03908	371	CDD	RING-H2_EL5-like	125	168	-	-
	Trre2g03908	371	SMART	ring_2	126	167	IPR001841	-
	Trre2g03908	371	MobiDBLite	consensus disorder prediction	212	255	-	-
	Trre2g03908	371	PANTHER	RING FINGER DOMAIN-CONTAINING	35	177	-	-
	Trre2g03908	371	MobiDBLite	consensus disorder prediction	344	364	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g03908	Trre-Chr2	45623650	45624765	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g03908	16	371	Rapid Response to Elicitors	AT3G05200	45.939	9.24e-94	284

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g03908	K10664		-	gmx:100810865	476.863

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