Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03908 ATGAAAATTTATCAAAATGACAGAACTACCCCTCTCTGCTTTCTCTTCATCTTCATCCTTTTCTCCGGCCTCGTCCCGTTCACCGGAGCACAGTCCGTCAACGACAACACAAACGACAACTATTACAACCGTGTAAGTCCTTCCATGGCAATAATAATAGTTATTCTCATCGCTGCTCTTTTTCTGATGGGATTCTTCTCGCTCTACATTCGTCGTTGTGCCGATTCACCTTCCAACAGTATCCGAAACATGGCAGGTATACCTGGAAGGTCACGACGCGCGGCGCGTGGTCTTGACGCTTCGATACTCGAGACTTTTCCGATATTTGAATACTCGGTGGTGAAGATTCATAAAATCGGAAAAGGTGCGTTGGAATGTGCTGTTTGTTTGAACGAGTTTGAAGAGACTGAAACGCTGCGTTTGATTCCAAAGTGTGATCACGTGTTTCATCCTGAGTGTATCGATGAGTGGCTTGGTTCTCATACCACTTGCCCGGTTTGCAGAGCTAATTTAGTTCCGCAACCGGGTGAATCGGTTCACGGAGTTCCGGTTTTTAATACTGAACCGGAAGATCTAGAGGCACAAAATGACGTTGTTGAATCAATTCCAGAACATCAAAATGAAGAGGGCGCGGTTAAAGAGTCAACTCAGCCACAAGTGTTGAGTTTAAGCAACACGTTGAACCGAAACCGGACAAGAGGTTCGCAATCTGGTCGGCCTCGTTGGTTTTCGCGGTCTCACTCGACCGGTCATTCAGTGGTTCAACCGGGTGAGAATACTGAAAGGTTTACTTTAAGGCTGCCGGTGGAAGTGAGGAAACAAATATTACAAAACCCGGAATTGCATCGGGCTAGAAGCTTGGTTGTGTTGCCAAGAGAAACTAGTTCACGACGTGGTTATCGAACCGGTGGCGGGGAAGGAAGTAGTAGAGGGAAATCTGTAAGGAGGTTGGACCGGGGTTTACTATCAGACCGGTGGGTTTTCACCATGGCACCTCCTTTCCTTGTAAGAGCATCGTCGATTAGGTCACCGAGGGTAGGCAATAGCGCCGGAGAAGGTACCTCCGGTTCAACAGCTACAGCAACGATTGTTGACTCGCCGCGCCCTCCAGTTTAA 1116 0.4785 MKIYQNDRTTPLCFLFIFILFSGLVPFTGAQSVNDNTNDNYYNRVSPSMAIIIVILIAALFLMGFFSLYIRRCADSPSNSIRNMAGIPGRSRRAARGLDASILETFPIFEYSVVKIHKIGKGALECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPQPGESVHGVPVFNTEPEDLEAQNDVVESIPEHQNEEGAVKESTQPQVLSLSNTLNRNRTRGSQSGRPRWFSRSHSTGHSVVQPGENTERFTLRLPVEVRKQILQNPELHRARSLVVLPRETSSRRGYRTGGGEGSSRGKSVRRLDRGLLSDRWVFTMAPPFLVRASSIRSPRVGNSAGEGTSGSTATATIVDSPRPPV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03908 371 MobiDBLite consensus disorder prediction 205 255 - -
Trre2g03908 371 MobiDBLite consensus disorder prediction 344 371 - -
Trre2g03908 371 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Trre2g03908 371 MobiDBLite consensus disorder prediction 294 313 - -
Trre2g03908 371 SUPERFAMILY RING/U-box 121 175 - -
Trre2g03908 371 CDD RING-H2_EL5-like 125 168 - -
Trre2g03908 371 SMART ring_2 126 167 IPR001841 -
Trre2g03908 371 MobiDBLite consensus disorder prediction 212 255 - -
Trre2g03908 371 PANTHER RING FINGER DOMAIN-CONTAINING 35 177 - -
Trre2g03908 371 MobiDBLite consensus disorder prediction 344 364 - -
Trre2g03908 371 FunFam E3 ubiquitin-protein ligase ATL6 88 174 - -
Trre2g03908 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 173 IPR013083 -
Trre2g03908 371 Pfam Ring finger domain 125 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03908 Trre-Chr2 45623650 45624765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03908 16 371 Rapid Response to Elicitors AT3G05200 45.939 9.24e-94 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03908 K10664 - gmx:100810865 476.863