Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03905 ATGTGTTTACCTGAAGAGGAAAGAGATAGAGTGAAAGATATGGCACTAGAAGCAGTGGTTTATCCACAAACACAAGACCCTTTTGGTTTTGGAATCAACAAAGATTTTTACAACTTCAACTTCAACAACCTTGTTGCAAAAGAACAAGAACATGAACAAAGATCTTTCTGTTTTGTAGAAAACCAAACAGAGAACAACGATTATCCTTATTATGGAGATTGGAATAACAATACTTTTTCACCACCCCATTTCAATGAACTTCAAGAAACTACTACGGATCCAAGTAGTAACACTAATAACACTCAAAACTTCGATACCTCGCCTTCCATCAACACGTTTGTTCGTCCGAAAAGGCGCAGAGCAAGAAGCCGAAAAAACAAAGAAGAAATTGAGAGTCAGAGAATGACTCACATTACTGTTGAACGCAATAGGAGAAAGCAAATGAATGAGTATCTTGCTGTTCTTCGTTCTCTAATGCCAGAATCTTACATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAATTTTGTTAAAGAGCTTGAACACAAGTTTCATTTGCTTGGTGCTAAGAAAGAAGAAGAGGTGAAATCTGATGATGTTGGTGGATCAAACAAACCATTTTCTGAGTTCTTTACATTTCCACAGTATTCAACAAGTAGTAGTGGTGTGTGTGGTAGTAGTTCTAATTCTGAAGCAACCATTGGTGAAAAAGTTGATGAGATTCAGTCTTGCATTGCTGACATAGAAGTGACAATGGTTGAAAGCCATGCAAATATCAAAATAAGATCAAAAAAGAGACCAAAACAGCTCTTGAAAATTGTATCTAGTTTGCATAACATGCATCTCACAATCTTGCATCTAAATGTTACCACTACTGGTGAAATTGTTCTCTACTCTCTCAGTGTTAAGGTTGAAGATGATTGCAAGTTGGGATCAGTGGATGATATAGCTACAGCTGTATATCAAATGGTGAATAAGATTCAACAAGAACAATGTTGA 1008 0.3651 MCLPEEERDRVKDMALEAVVYPQTQDPFGFGINKDFYNFNFNNLVAKEQEHEQRSFCFVENQTENNDYPYYGDWNNNTFSPPHFNELQETTTDPSSNTNNTQNFDTSPSINTFVRPKRRRARSRKNKEEIESQRMTHITVERNRRKQMNEYLAVLRSLMPESYIQRGDQASIIGGAINFVKELEHKFHLLGAKKEEEVKSDDVGGSNKPFSEFFTFPQYSTSSSGVCGSSSNSEATIGEKVDEIQSCIADIEVTMVESHANIKIRSKKRPKQLLKIVSSLHNMHLTILHLNVTTTGEIVLYSLSVKVEDDCKLGSVDDIATAVYQMVNKIQQEQC 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03905 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 183 IPR011598 GO:0046983
Trre2g03905 335 MobiDBLite consensus disorder prediction 80 113 - -
Trre2g03905 335 Pfam Helix-loop-helix DNA-binding domain 133 184 IPR011598 GO:0046983
Trre2g03905 335 SMART finulus 138 189 IPR011598 GO:0046983
Trre2g03905 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 196 IPR036638 GO:0046983
Trre2g03905 335 Gene3D - 122 203 IPR036638 GO:0046983
Trre2g03905 335 MobiDBLite consensus disorder prediction 80 131 - -
Trre2g03905 335 PANTHER MAX DIMERIZATION, MAD 81 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03905 Trre-Chr2 45441545 45443261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03905 14 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.250 1.32e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g03905 HLH 3.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03905 - - pvu:PHAVU_007G181900g 404.445