Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03903 ATGTTACCCTCACCACTTGATTCTTCATCTTCATTTCTGAGCACAACAACGGTAGTTGCACTTTGTGTATTCTTCGCACTCCTCTGCGCTTGCATCATCATCGGCCACCTTCTTGAAGAGAATCGATGGGCCAATGAATCCATCACTTCTCTCCTTCTTGGTTTGTGTTCTGGAGTGGTGGTGTTGCTGGTGACCAAATTCCATAGTACCGAGATTCTAATATTCAACGAAGATTTATTCTTTCTTTACTTGCTTCCACCAATCATTTTCAATGCCGGTTTCCAAGTCAAGAAGAAACAGTTCTTCAGGAATTTCACTACTATACTTCTGTTTGGAGTTCTTGGAACAGTTATTTCTTTCTCTCTTATATCTCTCGGTGCCTTTCTGCTCTTTAATATGATTGGAATAACTAACCTCGACATAAAAGATCATCTAGCCATTGGGGCCATATTATCAGCAACTGACTCAGTTTGTACATTACAGGTTCTGAGTCAAGATGAAACACCTTTTCTTTATAGCATTGTATTTGGCGAAGGAGTTGTAAATGACGCTACATCTATCGTTCTTTTCAATTCAGTTCAATCACTTGACATCAGCAGCATCAATGCTATTACAGTTTTGAAATTGTTGGGGACCTTTCTTTACCTCTTTTGCACTAGTACTGCCCTTGGCGTAGCAGTTGGCCTTTTAAGTGCTTATATTATTAAGACACTTTACTTTGGAAGGCACTCTACCGATCGCGAAGTTGCACTTATGATGTTAATGGCATATTTGTCATATATGATCGCCGAGCTTCTAAATCTCAGTGGAATTTTGACAATTTTCTTCTGTGGCATTGTTATGTCACACTACACATGGCACAACGTTACCGTAAGCTCAAGGACAACAACAAAGCACTCATTTGCAACTATATCATTCATTGCTGAAACCTTTATATTTCTATATGTTGGCATGGATGCTTTCGACATTGACAAATGGAAAAGGAACAATGCCAGCATAGGAACTTCAGTTGCTGTCAGCTCAACTTTGATTGCATTAGTTTTGATTGGAAGAGCAGCTTTTGTTTTCCCTATGGCAAACATTGCAAATTGCACCAAATCAAGAGAGAGCACCAAAATTGAGTTTCGTTCGCAGTTTATAATTTGGTGGGCAGGCCTGATGAGAGGTGCAGTAACCATTGCCTTGTCTTATAACCAGTTTTCAAAATCTAAGATAACATCGGCTGAAGACTCTTTGATGATCACTTCAACTATAATCCTTGTCTTATTCAGTACTGTGGTATTTGGTTCTATAACGAAGCCTTTGATTAAGGCTGTGAAGTTAAGGCATTCAAAACCATCCATTTATGATTCCACTGATATTCAAGAGGATCTGAGATTACTATTTCTTGAAAGCAATTGTTCCATCAACCAAAGCAATAATCAGACATATCGGAGACAAAGTAGCCTTAGTTTGATGATGCGTAATCCTACTACTACAGTTCACTACTTTTGGAGGAAATTCGATGATAAGTTTATGAGACCTATATTTGGTGGTAGAGGTTTTGTTCCAGTTGTTCCTGGTTCACCGTCCGCTGAAGAGGACATTTCTTGA 1593 0.3898 MLPSPLDSSSSFLSTTTVVALCVFFALLCACIIIGHLLEENRWANESITSLLLGLCSGVVVLLVTKFHSTEILIFNEDLFFLYLLPPIIFNAGFQVKKKQFFRNFTTILLFGVLGTVISFSLISLGAFLLFNMIGITNLDIKDHLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNSVQSLDISSINAITVLKLLGTFLYLFCTSTALGVAVGLLSAYIIKTLYFGRHSTDREVALMMLMAYLSYMIAELLNLSGILTIFFCGIVMSHYTWHNVTVSSRTTTKHSFATISFIAETFIFLYVGMDAFDIDKWKRNNASIGTSVAVSSTLIALVLIGRAAFVFPMANIANCTKSRESTKIEFRSQFIIWWAGLMRGAVTIALSYNQFSKSKITSAEDSLMITSTIILVLFSTVVFGSITKPLIKAVKLRHSKPSIYDSTDIQEDLRLLFLESNCSINQSNNQTYRRQSSLSLMMRNPTTTVHYFWRKFDDKFMRPIFGGRGFVPVVPGSPSAEEDIS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03903 530 PANTHER SODIUM/HYDROGEN EXCHANGER 16 510 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Trre2g03903 530 Gene3D - 140 192 - -
Trre2g03903 530 Pfam Sodium/hydrogen exchanger family 23 437 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre2g03903 530 PRINTS Na+/H+ exchanger signature 108 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre2g03903 530 PRINTS Na+/H+ exchanger signature 79 90 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre2g03903 530 PRINTS Na+/H+ exchanger signature 93 107 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre2g03903 530 PRINTS Na+/H+ exchanger signature 148 158 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre2g03903 530 NCBIfam sodium/hydrogen exchanger 3 21 458 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03903 Trre-Chr2 45418612 45421882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03903 17 530 Antiporters AT3G05030 62.286 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03903 K14724 - qsu:112009828 782.711