Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03883 ATGGCAAATGTGGGTGATGCTCCCCTGCCAGAGAATTGTTTATGGAATCATTTTAGAAGTTTTGATACTAAATCGATGAACGGTACTATGGGTGAAGGTTTTAATAATAAACCTAGGACTCTAGGATCTCTCTTGGCTAGTTCTGCTTCTGCTCAAGACTTGAGAAATATGGACCTTGAGAAAGAGAGAGATGACGAGGCATCTCCAAGAGGAGTCTTAGAGGCATGTGTTAGAGGCTTTGATGCTCAACAATCACCTGAACCAGAAACCAGTTGTTCGAATTCAAGGGCACGGTCACATTGGGGCAGATTTTTCAAACTGTGGAAGAGAAAATCGGTTAAACGCCTAGCTTCTATCCCTCCTATTGGTGTGCCAAGGATGCCAAAGTGGAAAAGCAAAAGCACTAGGGAAAATTGTGATATGAGTAGTAATCTACAAAATTTTAGGTCTTCTTTGGTGACTTTTAGCCTCTTTGACCTGAGAAATGCAACTGACAATTTCAACCAAGAAAATATTATTGGAAGAGGTGGTTTTTCTGAGGTTTACAAGGGTTCTCTCCAAGATGGACAACTAATAGCTATAAAGAAAATGACTACAGGAAGCACAGATGAGAAAACAGCCGGATTTCTATCTGAGCTAGGAATTATTGCTCATGTTGATCATCCTAATACCGCCAAGCTTGTTGGATGTTGTGTAGAGGGAGAAATGCATCTTGTCTTTGAACTCTCTACACTGGGAAGTTTAGGATCTGTTCTTCATGGTTCAGATAAAACCAAAATGGATTGGAGTAAAAGGTATAAAGTTGCTCTTGGAATAGCTGATGGTCTTCTCTATCTTCACGACAATTGTGAAAGGCGAATAATTCATAGAGATATAAAGGCAGAGAATATTCTGCTCACAGAGAATTTTGATCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTACCAGAACAACTGAGTCACCATAATGTGTCCACATTTGAAGGCACATTTGGGTATTTTGCTCCTGAATATTGCATGCATGGCATAGTGGATGAGAAAACTGATGTTTATTCTTTTGGTGTTCTACTTTTGGAAATCATAACCGGGCGCAAGGCTTTGGATCATAATCAGAAGAGCGTGGTAACATGGGCAAAACCTTTGCTTGATGCTAATAATATCAAGGATGTTGTCGATCCATCTCTTGGAGATACCTATGACAAAGGACAAATGGGATGTCTTGGTTTGACTGCAGCAATGTGTGTTGAGCAGTCTCCTATCTTACGCCCTCGAATGAATCAGGTTGTAACATTGCTAAGAGGACAAGACGCTGTCCTAGCCGCAAAAGCATGCAGCAGGAGGCCTCTCCAAAGAACATATTCGGAAGAGTTACTTGATGCACAAGAATACAACTCCACAAAATATCTACGAGAACTCAATCGACACAAGCAAGTTGCCTTGGGTCTTGACTGCATGTAA 1461 0.4093 MANVGDAPLPENCLWNHFRSFDTKSMNGTMGEGFNNKPRTLGSLLASSASAQDLRNMDLEKERDDEASPRGVLEACVRGFDAQQSPEPETSCSNSRARSHWGRFFKLWKRKSVKRLASIPPIGVPRMPKWKSKSTRENCDMSSNLQNFRSSLVTFSLFDLRNATDNFNQENIIGRGGFSEVYKGSLQDGQLIAIKKMTTGSTDEKTAGFLSELGIIAHVDHPNTAKLVGCCVEGEMHLVFELSTLGSLGSVLHGSDKTKMDWSKRYKVALGIADGLLYLHDNCERRIIHRDIKAENILLTENFDPQICDFGLAKWLPEQLSHHNVSTFEGTFGYFAPEYCMHGIVDEKTDVYSFGVLLLEIITGRKALDHNQKSVVTWAKPLLDANNIKDVVDPSLGDTYDKGQMGCLGLTAAMCVEQSPILRPRMNQVVTLLRGQDAVLAAKACSRRPLQRTYSEELLDAQEYNSTKYLRELNRHKQVALGLDCM 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03883 486 Gene3D Transferase(Phosphotransferase) domain 1 244 459 - -
Trre2g03883 486 Gene3D Phosphorylase Kinase; domain 1 129 241 - -
Trre2g03883 486 Pfam Protein tyrosine and serine/threonine kinase 169 374 IPR001245 GO:0004672|GO:0006468
Trre2g03883 486 PANTHER OS08G0249100 PROTEIN 54 476 IPR046958 -
Trre2g03883 486 SMART serkin_6 167 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03883 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Trre2g03883 486 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 244 447 - -
Trre2g03883 486 SUPERFAMILY Protein kinase-like (PK-like) 148 439 IPR011009 -
Trre2g03883 486 ProSiteProfiles Protein kinase domain profile. 167 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03883 486 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 143 242 - -
Trre2g03883 486 ProSitePatterns Protein kinases ATP-binding region signature. 173 196 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03883 Trre-Chr2 44975154 44979011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03883 130 478 Receptor kinase-like Gene Family AT1G53420 39.607 2.37e-77 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre2g03883 PK_Tyr_Ser-Thr 5.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03883 - - cam:101512181 795.808