Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03875 ATGGAGTGCAACAAGGACGAGGCTGTGAGGGCTAAGCAATTGGCAGAAAGTAGAATGCAAAGGATCCTTGCAGTTTGTGAGGTTCACATTGCTGCATCGAACAAACTCTATAGTTCTGAAATGGACTGGTATCAAATTCTTCAGACAGATCGACTCTCTGAGGAAGCAATCATAAAGAAACAGTACAGAAAGCTTGCATTGCTACTTCATCCTGATAAAAATAAATTTGCTGGTGCAGAAGCTGCTTTCAAGTTGATTGGGGAAGCCAATAGGGTGTTGAGTGACCAAGCAAAGCGGTCTTTACATGACATGAAGGTTAAAGCCCATGTGAGAGCAGCAGTACCTAAGAAGACCCCATCCTATCACTCAAATGGGAACATGTCTGCCGCAAATCAAGTTCCAAATGCAACAAAATCTCAGGAAAAACATTCTTCAAAATTCCCTTCTTCGAATCCCCATCTGAATGCACAACAGACATTCTGGACAATTTGCAATCATTGTAATACCAAGTTCCAGTACTACTTTAATATTATGAATATGACCTTATTATGTCAAAATTGTAAGAAACCCTTTGTAGCTCTTCGTATTAGTCAACAGGCTGCCCCATCATTTGTACCATTTGCTTCCCCAAAAGTTGCTCCAATGCAGGCTCCACCAAAATCAGCCTCTAAAAGTAATGGTGGAAAACCCCCTGGTGGTGGATATGCAGAAACTTTTATGAGGCCGCCGTATCCTTCATGTATGAAAACATGCGCCACTGGAGTTGGTAAGCAGCATAAAGATGAAAAGAGTAAGGATGGCTATGTTCCTGTGTCCAAACCAATGGAGTCACAAGCCTCAAAAAATGTTGGAAGCAAGAGAGTGAGACAACCAGAACCAAGTTCCAAACAGAGATTCAACACTCGAAATGATGATGAAAATAAAGATGTCAATGTTCCAGAAAATCATGTTGATCCTTCAAGGTTGAATGTTAGAAGGTCTTCCAGACAAAAGCAACATGTTTCATATGTGGAAAAGTATGCAGATGACAGTTTTGATGTTCCTTCCAAAAAGCCTCGACAAAACGAATCGTTTAACAATGATGAAGTTGAGGAAAAGAACGTGTCTGAAGAAACAGTTTTAAGTAATACAAGCGGAGATAAGCATTCTGATGTTCAAGAAGATAAGGTATTCGAGTCAGATACCGATTCTAAAATGTTAAATGAGGAAAACTGTCCTCCGAATTCAAATATCCCTTCCAGTCCAGAGATCATTACTTGTCCTGATCCAGATTTCAGTAATTTTGAGAAGGACAAAGCAGATGATTGTTTTGCTGCTAATCAATTATGGGCAATTTATGATACCACTGATGCTATGCCAAGGTTTTATGCTCTTATCAAGAAAGTGGCATTCCCTTTCAAGTTGCATATCACATGGTTGGAAGCTGACCCAGATGAGGATGATGAGGTTGCTTGGTATAATGCAGATTTGCCTATTGCTTGTGGTAAATTCAAACTTGGTAACTCTCAGAAAACCACAGATAAAGTTATGTTCTCTCATCAGATTCAGTTTATAAAAGGAAATGAGAAAAATTCTTACCTAGTGTTTCCCAAGAAGGGAGAAACTTGGGCAATTTTCAGAAATTGGGATGTCAAATGGAGTTATAATCCAGAAAATTATTTGAAGCGTGAATCTGCTTATGTGGAAATCCTATCAGATTTTACTGAAAATGTTGGCATTGAAGTAGCTTACCTAGGCAAAGTGAAAGGGTTTGTTAGCCTCTTTGAGAAAGCTGGGAAGACTGGAGAGAATACATTTTGTATTCTACCCAATGAGCTATACAGATTCTCACATCAAATTCCTTCATATAAGATGAGTGGTGATGAAAGGGAAGGTGTTCCAAGTGGTTGTTTTGAACTCGATCCTGCTGCCCTGCCAGACGTATTTGAAGCTGAGAAAGATTCAAGGGAAAAGATATGA 1959 0.3941 MECNKDEAVRAKQLAESRMQRILAVCEVHIAASNKLYSSEMDWYQILQTDRLSEEAIIKKQYRKLALLLHPDKNKFAGAEAAFKLIGEANRVLSDQAKRSLHDMKVKAHVRAAVPKKTPSYHSNGNMSAANQVPNATKSQEKHSSKFPSSNPHLNAQQTFWTICNHCNTKFQYYFNIMNMTLLCQNCKKPFVALRISQQAAPSFVPFASPKVAPMQAPPKSASKSNGGKPPGGGYAETFMRPPYPSCMKTCATGVGKQHKDEKSKDGYVPVSKPMESQASKNVGSKRVRQPEPSSKQRFNTRNDDENKDVNVPENHVDPSRLNVRRSSRQKQHVSYVEKYADDSFDVPSKKPRQNESFNNDEVEEKNVSEETVLSNTSGDKHSDVQEDKVFESDTDSKMLNEENCPPNSNIPSSPEIITCPDPDFSNFEKDKADDCFAANQLWAIYDTTDAMPRFYALIKKVAFPFKLHITWLEADPDEDDEVAWYNADLPIACGKFKLGNSQKTTDKVMFSHQIQFIKGNEKNSYLVFPKKGETWAIFRNWDVKWSYNPENYLKRESAYVEILSDFTENVGIEVAYLGKVKGFVSLFEKAGKTGENTFCILPNELYRFSHQIPSYKMSGDEREGVPSGCFELDPAALPDVFEAEKDSREKI 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03875 652 MobiDBLite consensus disorder prediction 116 151 - -
Trre2g03875 652 Pfam Domain of unknown function (DUF3444) 415 622 IPR024593 -
Trre2g03875 652 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 643 - -
Trre2g03875 652 MobiDBLite consensus disorder prediction 275 297 - -
Trre2g03875 652 MobiDBLite consensus disorder prediction 213 239 - -
Trre2g03875 652 MobiDBLite consensus disorder prediction 400 416 - -
Trre2g03875 652 SUPERFAMILY Chaperone J-domain 33 108 IPR036869 -
Trre2g03875 652 SMART dnaj_3 41 98 IPR001623 -
Trre2g03875 652 MobiDBLite consensus disorder prediction 119 151 - -
Trre2g03875 652 Gene3D DnaJ domain 39 161 IPR036869 -
Trre2g03875 652 PRINTS DnaJ domain signature 62 77 IPR001623 -
Trre2g03875 652 PRINTS DnaJ domain signature 78 98 IPR001623 -
Trre2g03875 652 PRINTS DnaJ domain signature 44 62 IPR001623 -
Trre2g03875 652 MobiDBLite consensus disorder prediction 255 416 - -
Trre2g03875 652 MobiDBLite consensus disorder prediction 298 369 - -
Trre2g03875 652 ProSiteProfiles dnaJ domain profile. 42 106 IPR001623 -
Trre2g03875 652 CDD DnaJ 42 95 IPR001623 -
Trre2g03875 652 Pfam DnaJ domain 42 103 IPR001623 -
Trre2g03875 652 MobiDBLite consensus disorder prediction 381 399 - -
Trre2g03875 652 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03875 Trre-Chr2 44781409 44783441 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03875 1 196 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 30.732 2.87e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03875 - - tpra:123896967 943.725