Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03862 ATGTTGGTTTCTAATGGAGAAGAGAAGATTCTGTTATCTTCAGAAAATGAAACTGAGATTTCAAAGTCAGATTCAGTTGATGGGTTGTTACCGGTTTCAACCGTTTATACCGATGTGGGTGTTGTTCCTGAGCAACAAAAGAATGAGCTTGAACACTTCATATCCAATTTACAAAGAGAAGTTGAGGAACTGAGGGTGAAGCAAAGAATAGTGGATGAAAAGAGAAGAGAAGCATTGAGTAAGATATTGGATATCAAAGGTAGCATTAGAGTTTTTTGTAGAATTCGACCGAATCATTTGACAGAGAAGAGAAGAAATTCTGAACCGGTATCAGCTGGATCGGAGAGAATTCGGGTTAAGTTGGGAGGAACAAGGAAGGATTTTGAGTTTGATAAGGTTTTTCCTCAAGAAACAAGCCAAGAAAGTGTTTTTGTTGAGGTGGAGCCAATTCTAAGATCTGCAATGGATGGACATAATGTGTGTGTTTTCGCTTACGCAGCTTTGAAGAGAAAGAAGTGTCATGTTCCATACAGAAATAGCAAGCTGACCCAACTACTGAGAGATTCTCTAGGTGATGGCTCAAAGGTCTTGATGCTCGTGCATATTAGCCCTTCCGAAGAAGATGTTTGCGAGACAGTTTGTTCATTAAACTTTGCGAAGAGAGCAAGAGCAATAGAGTCCAATAGAGAAGTACCAATGGAATTGAAGAAGCAAAGGGAGAAAAAAATTATGGAGCTCGAGGACGACATTAAGGAAGCTGAAAAGCAACGTCAAAGTTTAAGGGATCAAATACAGAATATCGAGTTAAAGTTAAGCGAGAATAAAAAGCTCTTTTCAACCATATATAGTCTTCAGGAAAGTGATGACTTGGTAACCTCTGCTAGCCTAAAAGATGATTTCAAAGAGGTCATTGAAACACCTAAAACATCTAAGAAGAATATTCAAAGAAGTGTCTCGAATTCAGTGCCTCGATTCATGAGTTCAACTGTTGCCAGTCGGCATAGGCAAATTGCGTCCGAACAAGAAATTGGTGGGAGAACAAAAAGTTTAAGATCAGTAGTCACCAGAAGTTCAATCCAGTTTCCATGTTCACAATCGTTAAGTTATTCAGATCTTCGCATCAAAACAATACTGCGAAGTTCAACTGGAAAATCTCGGTATGCTGAAACAAATAATGTTCCAAATACAGAAAGTCCTAAATGCAATGAATCAGAATCAAAAGTAATAACTCCTCGAAGTACAACAGTTACATCATCAGATTCAAATTTGAGATCAACATTGTATCATCATAGAAGAAGGATGTCTAATCTGATCTAA 1317 0.3797 MLVSNGEEKILLSSENETEISKSDSVDGLLPVSTVYTDVGVVPEQQKNELEHFISNLQREVEELRVKQRIVDEKRREALSKILDIKGSIRVFCRIRPNHLTEKRRNSEPVSAGSERIRVKLGGTRKDFEFDKVFPQETSQESVFVEVEPILRSAMDGHNVCVFAYAALKRKKCHVPYRNSKLTQLLRDSLGDGSKVLMLVHISPSEEDVCETVCSLNFAKRARAIESNREVPMELKKQREKKIMELEDDIKEAEKQRQSLRDQIQNIELKLSENKKLFSTIYSLQESDDLVTSASLKDDFKEVIETPKTSKKNIQRSVSNSVPRFMSSTVASRHRQIASEQEIGGRTKSLRSVVTRSSIQFPCSQSLSYSDLRIKTILRSSTGKSRYAETNNVPNTESPKCNESESKVITPRSTTVTSSDSNLRSTLYHHRRRMSNLI 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03862 438 Coils Coil 236 277 - -
Trre2g03862 438 Coils Coil 47 77 - -
Trre2g03862 438 PANTHER KINESIN-LIKE PROTEIN KLP-3 166 397 IPR027640 GO:0003777|GO:0007018
Trre2g03862 438 ProSiteProfiles Kinesin motor domain profile. 88 165 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g03862 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 265 IPR027417 -
Trre2g03862 438 Pfam Kinesin motor domain 168 225 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g03862 438 Pfam Microtubule binding 73 167 IPR031852 GO:0008017
Trre2g03862 438 Gene3D - 164 276 - -
Trre2g03862 438 ProSiteProfiles Kinesin motor domain profile. 166 225 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g03862 438 SMART kinesin_4 86 233 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre2g03862 438 Gene3D Kinesin motor domain 34 163 IPR036961 -
Trre2g03862 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 165 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03862 Trre-Chr2 44528693 44530866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03862 166 225 Calmodulin-binding Proteins AT5G65930 50.000 1.62e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03862 - - gmx:100778856 389.037