Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03860 ATGAGTGAAAGAGGAAAAAAAGAGAGGATGAAGAACATCTTCAAGAAGCTTCATATAGGTAGCAGCCATGATCCTCCTCATCGATCCAATGAAACTCCGCCACCTGTACCATCGCCGTCTTGTGCCGCCGAAGATGTTCAGAGTTCCGCTACTTCTACAGTAACTCCAACTTCCTCATCGCCGTCTACAGCACCGGTTCCTGCTGCTTTCTCCGGTGGCGGCGGTGTGTCTGCGGTGGTCAATCGGCAAGATTTTTTCTCGTCGGAAGAGGAATTTCAGGTGCAGCTTGCCCTAGCTATCAGTGCTTCAAATTCGGATTTTCGTAGTGATGATCCGGAGAAGGATCAGATCCATGCCGCAACGCTGCTCAGTTTGGGAGGACATCGGATTGATTCGACCGGGAATAAAGATGATGTGGCGGAGGCGCTTTCGAGGCAGTATTGGGAATACAATGTGCTTGACTATGAGGAGAAAGTAGTAGATGGTTTTTATGATGTATATGGACTTTACAATGACCCGGCAATGCAAGGAAAGATGCCATCTCTAGCAGATCTTGAAACAAATCCTGGCAGTTCTAGCTTTGAAGTGGTCATAGTTAATCGAACAATTGATCCAGCCCTTGAAGAGCTGGTGCAAATTGCACAATGTATATCATTGGACTGCCCTGTCACCGAGATTGGTATTTTGGTACAAAGGCTTGCCGAACTTGTTACTAGCCATATGGGGGGCCCTGTAAAGGATGCTAATATTATATTAGCAAGATGGACAGAAAGAAGTACAGAGTTAAGGACATCTCTTCACACAAGTGTATTACCGCTTGGGTCCTTAGATATTGGGCTCTCTAGGCATCGCGCTTTACTTTTCAAGATATTAGCAGACAACATTAAGATGCCTTGTAGACTGGTTAAAGGTAGTCATTACACTGGTGTTGAGGATGATGCTGTCAACATTATAAAGTTGGAGGATGAAAGGGAGTTTTTAGTTGATCTCATGGCTGCTCCTGGAACACTCATCCCAGCTGATATTTTAAATGCAAAGGATAGCGCCTTTAAGTCTTACAACCCCAAGATTGTGCCGAGTTTTCCTTCTGCTGAGGAAACTGAGCCTTCTTACTCAAGACCTATTCCACCATCTAATGGTGAAGGTAGTAGTCGGACTTCTGTGATAAAAGGTAATGCGCTGCCTTGGAATGGAAAATCATATACCGAGAAGTTCGAGTATATGCCTTCAAACTTTGGTTTGAACAGAGACACTGGCGTTGGTCCTTCTAAAATTCCTAATAGAGGGAGTCCTAACCAACGGGAAAATTTGCCACCGTCATATGGTAATTCTTTGTACAAAGGTACTCTTGGAATGAATGCAGTTGGTGATGGGACAAGATTGAATGTCAATGTTGTGCCATATCCCCAAAACAACCCCAACGACCCTCAGAACCTTTTTGCAGAACTGAACCCATTCTTGATAAAAGGGACTGGGAAGCCTTCTGTGCATAACAAACCTGTGGAAAATAAACCTCCTGAGCACGGTATAAAAAACAAAAATGTTTCTGGTAGACCTGTCTCACCACTGATGTGGAAGAATCAGCATGCTTACAACGAAGTCCCCAGGAAAAATAATCATAACCCTAATGAATATAACCCTCCTTTATTTGCTCCCAATATTTCTTCCAGATCTGAAAATACTGATCTCGGCACTTCCAATTCATCATACAATTCAAATATAAACAATGATATTAGTTCTCAAACTTTGGCACGAATTACTGGTTCAGTCTCACCAGCTGGTGTAGGTGAACTGAACCGGACTGAGGGTCTCGATGCTAATTTTAAAAGGGGTGATTTGGGAAGTTCTCAAAATGTCATGGTTAATGAACCCGAAAACAATGAACTTGGCCATCATGACAGGAGGAAGTGCATATATGACAGATTCATGGGAAGCAATTTGGAATTAAAAGATTCAGATAGTCCTAGCTCTTCAATTGATTACATTACAAATAGGGTTGATCAAATATTGGACGATGCAGATGTTGGTGAATGTGAGATTCCATGGGAGGATCTGGTTATTGGTGAAAGAATTGGTCTAGGTTCATATGGTGAGGTATACCGTGCAGACTGGAATGGCACAGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCCGCCTTGTCTGAATTCAAAAGAGAAGTACGGATAATGCGTAGGCTGCGTCATCCAAACGTTGTTCTTTTTATGGGTGCTGTCACCCGGCCTCCTAATCTCTCGATCATTTCAGAGTTTCTCCCGAGAGGAAGCTTGTACCGAATTCTTCACCGCCCTAATTGTCAGATCGACGAGAAACAAAGAATAAAAATGGCTCTGGATGTGGCTAGGGGTATGAATTGCTTGCACGCCAGCACACCTACTATTGTTCACAGAGATCTGAAGTCCCCGAATCTTTTGGTTGATAAGAACTGGAATGTTAAGGTATGCGATTTTGGGTTGTCAAGGTTGAAGCATAACACATTTTTATCATCCAAATCAACTGCTGGAACGCCGGAATGGATGGCTCCTGAAGTTCTCCGTAATGAGCCTTCAAATGAGAAGTGTGATATTTATAGTTTTGGTGTCATCCTATGGGAGCTTGCCACTTTAAGGTTGCCATGGAGTGGGATGAATCCTATGCAAGTTGTTGGTGCTGTAGGTTTCCAAAACCGTCGCCTTGAAATTCCTAAGGAAGTTGATCCATTAGTTGCAAGAATAATCTGGGAATGTTGGCAACAGGATCCAAATTTGCGCCCCTCGTTTGCACAGCTCACAGTGGCTCTAAAGCCCTTGCAACGTCTGGTTATCCCATCTTATCAAGACATGGTAGCTTCACCTCTGCCTCAGGAGATTTCTGTAAATTCTACCCCATGA 2901 0.4347 MSERGKKERMKNIFKKLHIGSSHDPPHRSNETPPPVPSPSCAAEDVQSSATSTVTPTSSSPSTAPVPAAFSGGGGVSAVVNRQDFFSSEEEFQVQLALAISASNSDFRSDDPEKDQIHAATLLSLGGHRIDSTGNKDDVAEALSRQYWEYNVLDYEEKVVDGFYDVYGLYNDPAMQGKMPSLADLETNPGSSSFEVVIVNRTIDPALEELVQIAQCISLDCPVTEIGILVQRLAELVTSHMGGPVKDANIILARWTERSTELRTSLHTSVLPLGSLDIGLSRHRALLFKILADNIKMPCRLVKGSHYTGVEDDAVNIIKLEDEREFLVDLMAAPGTLIPADILNAKDSAFKSYNPKIVPSFPSAEETEPSYSRPIPPSNGEGSSRTSVIKGNALPWNGKSYTEKFEYMPSNFGLNRDTGVGPSKIPNRGSPNQRENLPPSYGNSLYKGTLGMNAVGDGTRLNVNVVPYPQNNPNDPQNLFAELNPFLIKGTGKPSVHNKPVENKPPEHGIKNKNVSGRPVSPLMWKNQHAYNEVPRKNNHNPNEYNPPLFAPNISSRSENTDLGTSNSSYNSNINNDISSQTLARITGSVSPAGVGELNRTEGLDANFKRGDLGSSQNVMVNEPENNELGHHDRRKCIYDRFMGSNLELKDSDSPSSSIDYITNRVDQILDDADVGECEIPWEDLVIGERIGLGSYGEVYRADWNGTEVAVKKFLDQDFSGAALSEFKREVRIMRRLRHPNVVLFMGAVTRPPNLSIISEFLPRGSLYRILHRPNCQIDEKQRIKMALDVARGMNCLHASTPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDIYSFGVILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPLVARIIWECWQQDPNLRPSFAQLTVALKPLQRLVIPSYQDMVASPLPQEISVNSTP 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03860 966 MobiDBLite consensus disorder prediction 1 68 - -
Trre2g03860 966 ProSiteProfiles Protein kinase domain profile. 685 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03860 966 MobiDBLite consensus disorder prediction 608 628 - -
Trre2g03860 966 SMART serkin_6 685 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03860 966 ProSitePatterns Protein kinases ATP-binding region signature. 691 713 IPR017441 GO:0005524
Trre2g03860 966 MobiDBLite consensus disorder prediction 493 521 - -
Trre2g03860 966 FunFam Serine/threonine-protein kinase isoform 1 676 763 - -
Trre2g03860 966 Gene3D Phosphorylase Kinase; domain 1 678 762 - -
Trre2g03860 966 MobiDBLite consensus disorder prediction 549 568 - -
Trre2g03860 966 SUPERFAMILY Protein kinase-like (PK-like) 676 957 IPR011009 -
Trre2g03860 966 Gene3D Transferase(Phosphotransferase) domain 1 764 946 - -
Trre2g03860 966 MobiDBLite consensus disorder prediction 372 388 - -
Trre2g03860 966 Pfam Protein tyrosine and serine/threonine kinase 686 935 IPR001245 GO:0004672|GO:0006468
Trre2g03860 966 MobiDBLite consensus disorder prediction 425 439 - -
Trre2g03860 966 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 83 940 - -
Trre2g03860 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Trre2g03860 966 MobiDBLite consensus disorder prediction 42 66 - -
Trre2g03860 966 MobiDBLite consensus disorder prediction 420 439 - -
Trre2g03860 966 Pfam Ethylene-responsive protein kinase Le-CTR1 140 338 - -
Trre2g03860 966 FunFam PAS domain-containing protein tyrosine kinase family protein 763 953 - -
Trre2g03860 966 CDD STKc_MAP3K-like 691 934 - -
Trre2g03860 966 MobiDBLite consensus disorder prediction 1 25 - -
Trre2g03860 966 MobiDBLite consensus disorder prediction 359 388 - -
Trre2g03860 966 PRINTS Tyrosine kinase catalytic domain signature 759 772 IPR001245 GO:0004672|GO:0006468
Trre2g03860 966 PRINTS Tyrosine kinase catalytic domain signature 908 930 IPR001245 GO:0004672|GO:0006468
Trre2g03860 966 PRINTS Tyrosine kinase catalytic domain signature 845 855 IPR001245 GO:0004672|GO:0006468
Trre2g03860 966 PRINTS Tyrosine kinase catalytic domain signature 864 886 IPR001245 GO:0004672|GO:0006468
Trre2g03860 966 PRINTS Tyrosine kinase catalytic domain signature 798 816 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03860 Trre-Chr2 44518803 44527141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03860 10 921 MAP Kinase Kinase Kinase AT1G08720 55.591 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre2g03860 PK_Tyr_Ser-Thr 7.6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03860 - - aprc:113870732 1542.71