Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03842 ATGGCAGCATTCTTTCAAAACGGTGTCGTTTCACCCAAACAAGAATTCGTCGAATTCCAAGCCGAATACGAAGAAGAAGTAGAACAAGAATTTGACGAAGTTTTAGTCGAACCACACGAAACCGAACAATCACCTTCCTCCGCCGTCCCCACCGTCATATTAGCCTTACCAAACGCCTCAGCATCAACTGTCGTCGACGACTCGCCTGAGCCAAAACGTGACCAAATGGAAGAGAAGAACGATTCACGGAAAATGTTTCAACGTCTCTGGACTGACGAAGATGAGATCGTAATCTTGCAAGGATTTCTTGATTACAACGCGAATCGTGGATCGTCTTATCACAACGACACTGGTTCTTTCTATGATCAAATTAAGTCCAAGATTCAACTCGATTTCAACAAGAGCCAGCTTGTTGATAAGCTCCGAAGGTTGAAGAAAAAGTATCGGAACGTTCTTCAGAAATTTGATTCTGGTAAGGAATTTATCTTCAAAACTCCTCATGATCAAGCTACGTTTGAAATTTCACACAAAATTTGGAACAACGTCACTCCAATTGCCGTTGGTGTTCCAGTGGAAGACGATGAAGAAATTAGCCCTAACCCTAACCCTAATTCAGCTCATATGATAACACCGGTGAAGAATGAGCTGATTACTGAGAAGAAAACTACGCCATCGCGTAAGCGATCGCGATTGGAGGAGAAGCCTGAATTGAATGATTCTTCAGCTTTGACTAAGGATAATCATAATAATTCTGCTAATAACAATAGTAGCAATGTTGATGGTGAAAATGGTGATAAAAGTAACGGTAGTCATACACATAACATACCTGGATTGATTGAAGAGACTGTTAAGAGTTGCTTGACGCCGGTGTTGAAGGAGTTATCGAGTCGTAACACCATGGCGAGTCCTTTTGGTTTTGGGGGAAGAGGGTTTTCATTGGATCCTATACCATTTAGTTTTTTGAATCTTGGGAATGGTGAAAAAGTGGTGGATGAGAAGTGGAAGAAGCAACAGATATTGGAGTTGGAAGTGTACTCGAAGCGATTGGAGCTGGTGCAGGATGAGATCAGGGTTGCTTTGGAGGAGTTGCGATCGTCTTCCGGAGCTGGAGCTAGAGGAGGAAACAACCATCAATAG 1137 0.4266 MAAFFQNGVVSPKQEFVEFQAEYEEEVEQEFDEVLVEPHETEQSPSSAVPTVILALPNASASTVVDDSPEPKRDQMEEKNDSRKMFQRLWTDEDEIVILQGFLDYNANRGSSYHNDTGSFYDQIKSKIQLDFNKSQLVDKLRRLKKKYRNVLQKFDSGKEFIFKTPHDQATFEISHKIWNNVTPIAVGVPVEDDEEISPNPNPNSAHMITPVKNELITEKKTTPSRKRSRLEEKPELNDSSALTKDNHNNSANNNSSNVDGENGDKSNGSHTHNIPGLIEETVKSCLTPVLKELSSRNTMASPFGFGGRGFSLDPIPFSFLNLGNGEKVVDEKWKKQQILELEVYSKRLELVQDEIRVALEELRSSSGAGARGGNNHQ 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03842 378 PANTHER BNAANNG10740D PROTEIN-RELATED 42 362 IPR007592 GO:0006355
Trre2g03842 378 MobiDBLite consensus disorder prediction 192 275 - -
Trre2g03842 378 MobiDBLite consensus disorder prediction 219 241 - -
Trre2g03842 378 MobiDBLite consensus disorder prediction 67 81 - -
Trre2g03842 378 Pfam Protein of unknown function, DUF573 86 180 IPR007592 GO:0006355
Trre2g03842 378 Coils Coil 134 154 - -
Trre2g03842 378 MobiDBLite consensus disorder prediction 60 81 - -
Trre2g03842 378 Coils Coil 342 362 - -
Trre2g03842 378 MobiDBLite consensus disorder prediction 242 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03842 Trre-Chr2 44326316 44327452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03842 33 370 GeBP Transcription Factor Family AT5G28040 45.358 3.03e-80 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trre2g03842 DUF573 8.9e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03842 - - psat:127097903 480.715