Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03841 ATGTTGTCACCATTGGTTTCTTGGATTTTTTCACCCTCATCTTCTTCCTCATCCTCAGAAGAAGAAGAAGAAGAAGAATTAAGTCTTGACATTAACAATGAAGAATCAGACTATGAAAACTTTGAAAATGACAATGTGGAAGACCAAATGGAGAATGTGGATAACGACGAAAAGGACAATTTTCTAAGTCCATGCGACGTTGATGACACCATTCCCATTGCACTTGCGGCTTCTGATGCATTCCCCGCTGTGACGGTGGCCTTGCCTGCCCCCACAGATGACACAAACACCGCCACCACATCCGCTGCCACCACTATAGCAACACGCTCCACAAGACAACGCAACAACAAGTATTCAGGCGGCGTTAGACAATATCAGAGGCTATGGACAAAGCAGGACGAGATGGAACTGTTGAAGGGATATCTGGATTACATCAAGCAGCAAGGGAAAACAGCTACCACTCTTCAAAGCGACGTAGCTTCGTTCTATGATCAAGTTATGCCTAAATTGAACACATATTTCAATAAGAACCAGCTTGTTGAGAAACTACGTAGGTTAAAGAGAAAACACAAGATGATTTTGGACAAAGGCAAAGAGGTTCAGGTTTCTTTCAAGATTCCGCATGAACAGGCGATTTTCGAAATTTCCCACAAGATTTGGGGCAATGACACGGACAATGATGTTTTGGATGTTGATGAATCAAGACATGTTTCTGAAACTCCTGATCTAATTGACAATGTTAAGATGAAGAATGAACATGTTGACAATTGTGAAGAAACAGATAAAAGGGTGCACAAACGTATGAGGTTAACAACAGATGATGTGAACACAAAAAATGACCAGAACTATAGCGACGTTACTAGTATACATGGCTTCATTGAGGAAACCATGAGGTCCTGTTTCTCACCATTGTTGAAGGAATTGTTGGACGATGCTCCTGTAGAGCCACTCGGCGCGTTGCCAATGATGTTATCCTCTGGGGAGGTGAGGGATGAGCACTGGTTAAAACGGAGAATTTTGGAGCTTGAGGTGTATTTGAACCGGTTGGAGTTGTTGCAGGGCCAGATCAAGGCTAGATTGGAGGAGTTAAAATCTAGCTTAGATTGA 1107 0.4264 MLSPLVSWIFSPSSSSSSSEEEEEEELSLDINNEESDYENFENDNVEDQMENVDNDEKDNFLSPCDVDDTIPIALAASDAFPAVTVALPAPTDDTNTATTSAATTIATRSTRQRNNKYSGGVRQYQRLWTKQDEMELLKGYLDYIKQQGKTATTLQSDVASFYDQVMPKLNTYFNKNQLVEKLRRLKRKHKMILDKGKEVQVSFKIPHEQAIFEISHKIWGNDTDNDVLDVDESRHVSETPDLIDNVKMKNEHVDNCEETDKRVHKRMRLTTDDVNTKNDQNYSDVTSIHGFIEETMRSCFSPLLKELLDDAPVEPLGALPMMLSSGEVRDEHWLKRRILELEVYLNRLELLQGQIKARLEELKSSLD 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03841 368 PANTHER BNAANNG10740D PROTEIN-RELATED 13 362 IPR007592 GO:0006355
Trre2g03841 368 Pfam Protein of unknown function, DUF573 126 221 IPR007592 GO:0006355
Trre2g03841 368 Coils Coil 24 51 - -
Trre2g03841 368 Coils Coil 176 196 - -
Trre2g03841 368 MobiDBLite consensus disorder prediction 1 17 - -
Trre2g03841 368 MobiDBLite consensus disorder prediction 1 44 - -
Trre2g03841 368 Coils Coil 346 366 - -
Trre2g03841 368 MobiDBLite consensus disorder prediction 18 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03841 Trre-Chr2 44322428 44323534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03841 74 365 GeBP Transcription Factor Family AT5G28040 34.648 7.95e-47 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trre2g03841 DUF573 1.1e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03841 - - tpra:123888796 553.903