Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03835 ATGGCGGACAAGGCAGTCACCATCCGAACCAGGAAGTTCATGACCAACAGGCTTCTCTCCAGGAAGCAATTTGTCATTGATGTTCTTCATCCTGGAAGGGCAAATGTTTCCAAGGCTGAGCTAAAAGAGAAGTTGGCTAGAATCTATGATGTGAAGGACCCAAACACCGTGTTCGTCTTCAAGTTCAGAACTCATTTTGGTGGTGGCAAGTCCACAGGTTTTGGTTTGATCTATGATTCCGTGGAGAATGCTAAGAAATATGAGCCAAAATACAGACTTATCAGGAACGGACTTGATACTAAGGTTGAAAAGTCTAGGAAGCAAATGAAGGAAAGAAAGAACAGATCAAAGAAGATTCGTGGAGTAAAGAAGACCAAGGCTGGTGATGCTGCCAAGGGTGGAAAGAAGAAATAA 414 0.4324 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRSKKIRGVKKTKAGDAAKGGKKK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03835 137 FunFam 40S ribosomal protein S24 1 137 - -
Trre2g03835 137 Pfam Ribosomal protein S24e 25 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Trre2g03835 137 Gene3D - 1 132 - -
Trre2g03835 137 MobiDBLite consensus disorder prediction 98 137 - -
Trre2g03835 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trre2g03835 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Trre2g03835 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 131 IPR001976 GO:0003735|GO:0005840|GO:0006412
Trre2g03835 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03835 Trre-Chr2 44311499 44313146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03835 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 87.121 1.32e-84 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03835 K02974 - gmx:100499852 238.81