Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03796 ATGGATAGGGTCTTCTCAGTGGACGAAATTCCCGACCACTTATGGTCGCCGCAGATTCACGTCTCCGGCGGCGGCGCTGAACAATCCTCCTCCAACATGAGTCGCAGCGCTTCTGAATGGGCTTTTCAACGCTTTCTTCAAGAAGCTGCCACATCTCCCCTTTCTTCCTCTGTTGCTGATGAAAACGTCGTTGACACCGCCGCGCCTCTTCCGACGAAGGACGATGCTGCCGTTTTGAACAATGGACCTCCGCCTCCACATCCTCCTCCGGTGGCCGTTGATTCGGAAGAATATCGTCGAGCTGTGTTGAAGAGTAAGCTGAGTCTTGCGTGTGCTGCAGTTGCCATGACTAGGGGATCTTTGACTAAATCTCAAGATCTAGCCAGTTTTTCTGAGAATGGATCACAGTCATCTAATCCTACTCAAGTTGGACCTCAGCCCATTTTTGAAGGATCTGCTCCTCCTGGAAATGATCCACCTATATTACAAGATAAAGATGCCAAAGCACCACCTGCGATCCCTTCCATACCTCCTGTCCAGAAAAAAACTGTTGTTGCAACTAGGCCATCAACAAGTGGATCATCAAGAGAACAGTCAGATGATGACGAAGCTGAGGGAGAGACATATATGAATGACAACACAGACCCTACTGACGTAAAACGAGTAAGGAGGATGCTTTCCAATAGAGAGTCAGCTAGACGCTCAAGACGAAGAAAGCAGGCTCATTTAACTGAGTTGGAAACACAGGTTTCTCAATTAAGAGGCGAAAATTCTACCTTGGTAAAGCGCCTTACTGATGTGAGCCAAAAGTACACTGAATCTGCTGTTGACAACAGAGTACTGAAAGCTGATGTTGAAACGTTAAGAGCAAAGGTGAAGATGGCTGAAGAGACCGTCAAAAGAATTACCGGATTGAACCCGATGTTTCATGTGATGCCTGATATATCATCAATCGGCATGCCATCATTTGATGGAAGCCCTTCAGACAATTCAGCTGATGCAGCTGTTCCTGTGCAAGATGATCCAAATCATCACTTCTATCAACCCGCATCTAATAATCCTATGCCGTGTCATGATATCAGAGTCAACAATGGGTTGGGAGACATTTCTACAATTGAAAATGTACAGCAGAATAATGCAGCAGTTGTAGGTGGCAACAAGATTGGTCAAACAACTCAAACAGCTTCTCCCTTGCACCGGGTTGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGGTGTCGATTCTTGTGGACCATCTTCTAATGGAGAGCAGTAA 1281 0.4645 MDRVFSVDEIPDHLWSPQIHVSGGGAEQSSSNMSRSASEWAFQRFLQEAATSPLSSSVADENVVDTAAPLPTKDDAAVLNNGPPPPHPPPVAVDSEEYRRAVLKSKLSLACAAVAMTRGSLTKSQDLASFSENGSQSSNPTQVGPQPIFEGSAPPGNDPPILQDKDAKAPPAIPSIPPVQKKTVVATRPSTSGSSREQSDDDEAEGETYMNDNTDPTDVKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSTLVKRLTDVSQKYTESAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMFHVMPDISSIGMPSFDGSPSDNSADAAVPVQDDPNHHFYQPASNNPMPCHDIRVNNGLGDISTIENVQQNNAAVVGGNKIGQTTQTASPLHRVASLEHLQKRIRGGVDSCGPSSNGEQ 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03796 426 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 223 238 IPR004827 GO:0003700|GO:0006355
Trre2g03796 426 Coils Coil 278 298 - -
Trre2g03796 426 CDD bZIP_plant_GBF1 221 271 IPR045314 GO:0003700|GO:0006355
Trre2g03796 426 Coils Coil 229 263 - -
Trre2g03796 426 FunFam BZIP transcription factor 218 269 - -
Trre2g03796 426 SUPERFAMILY Leucine zipper domain 220 271 IPR046347 GO:0003700|GO:0006355
Trre2g03796 426 MobiDBLite consensus disorder prediction 15 37 - -
Trre2g03796 426 SMART brlzneu 216 280 IPR004827 GO:0003700|GO:0006355
Trre2g03796 426 PANTHER BASIC LEUCINE ZIPPER 63 1 416 - -
Trre2g03796 426 Pfam bZIP transcription factor 219 271 IPR004827 GO:0003700|GO:0006355
Trre2g03796 426 MobiDBLite consensus disorder prediction 67 93 - -
Trre2g03796 426 MobiDBLite consensus disorder prediction 126 146 - -
Trre2g03796 426 MobiDBLite consensus disorder prediction 22 37 - -
Trre2g03796 426 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 218 270 IPR004827 GO:0003700|GO:0006355
Trre2g03796 426 Gene3D - 219 276 - -
Trre2g03796 426 MobiDBLite consensus disorder prediction 126 218 - -
Trre2g03796 426 Pfam Basic leucine-zipper C terminal 287 415 IPR020983 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03796 Trre-Chr2 43545015 43550541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03796 1 309 bZIP Transcription Factor Family AT4G02640 41.641 6.43e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre2g03796 bZIP_C 5.1e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03796 K25784 - gmx:100170702 528.865