Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03794 ATGGCGAATAATTGTTCAGAAGGATTAGGTGATGATTTCTTCGAGCAGATCTTAGCAGTGCCTGAAAATGGAGTTGGATATGGAAGAAATATGGATCATGTTGGTGGAGGAGTGTTGCAATTGGGATCAACTACTACTACACCTCCTTTGAGAGGTGTAGGAGGAATAATGCCGTTGGGGTTGAATTTGGAACAAACTCATCATGGATTTCTCAGACACCAACAAGATGCAACGCGGTTTGTTGATAACGTTGTTGAGAGTAACATTACCAATAACAACAATCATCATCAACATCTTCTTCTTCATGATATCAATAATCAGAACAACAACAATAACACTTCTTCACCTTCTTCTACTCCGGGAATCACTGATAGGGATTCAATGCACATGAGGGGTTTGTTTTCAACGTTTGGACAATTGCATACTCCTACTCATGCTCAGCCTGTACGCCCCATGCTCCCATCTCCACCTCCTCAACCTCAACTCCATCTTCACCATCAACACCAACAGCACTTTCAGAGCCAGCCGCCAAATCCAGCCTCTGTTACAGCCATGGCACAAGCCCCTGGCATCCGCCCTCGAGTGCGAGCAAGAAGAGGCCAAGCCACAGATCCTCACAGCATTGCTGAGCGATTGCGTCGTGAAAGAATCGCGGAAAGAATGAAGGCATTACAGGAGTTAGTTCCAAGCATCAACAAGACGGACAAAGCAGCAATGCTTGATGAAATTGTTGATTATGTGAAGTTTCTTAGGCTCCAAGTTAAGGTCTTGAGCATGAGTAGACTTGGTGGAGCTGGAGCAGTTGCTCAGCTTGTAGCTGATGTTCCTGTTTCTGCTGTGGAGGGGGACGACATAGAAGGTGGAGCTAACCAGCAAGCCTGGGCGAAGTGGTCGAACGATGGAACAGAACAACAAGTGGCTAAACTTATGGAAGAAGATGTTGGTGCAGCTATGCAACTTCTACAATCCAAGGCACTTTGTATCATGCCTATATCTCTAGCCTCAGCAATTTTTCGTATGCCACAATCAGACACATCAACAATCATCAAGCCTGAATCAAACAACAGCCACTCATAG 1077 0.4531 MANNCSEGLGDDFFEQILAVPENGVGYGRNMDHVGGGVLQLGSTTTTPPLRGVGGIMPLGLNLEQTHHGFLRHQQDATRFVDNVVESNITNNNNHHQHLLLHDINNQNNNNNTSSPSSTPGITDRDSMHMRGLFSTFGQLHTPTHAQPVRPMLPSPPPQPQLHLHHQHQQHFQSQPPNPASVTAMAQAPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPVSAVEGDDIEGGANQQAWAKWSNDGTEQQVAKLMEEDVGAAMQLLQSKALCIMPISLASAIFRMPQSDTSTIIKPESNNSHS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03794 358 MobiDBLite consensus disorder prediction 162 182 - -
Trre2g03794 358 MobiDBLite consensus disorder prediction 104 127 - -
Trre2g03794 358 Gene3D - 196 258 IPR036638 GO:0046983
Trre2g03794 358 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 94 335 - -
Trre2g03794 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 250 IPR011598 GO:0046983
Trre2g03794 358 SMART finulus 207 256 IPR011598 GO:0046983
Trre2g03794 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 260 IPR036638 GO:0046983
Trre2g03794 358 MobiDBLite consensus disorder prediction 154 187 - -
Trre2g03794 358 FunFam Transcription factor bHLH66 198 263 - -
Trre2g03794 358 MobiDBLite consensus disorder prediction 104 124 - -
Trre2g03794 358 Pfam Helix-loop-helix DNA-binding domain 206 250 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03794 Trre-Chr2 43526669 43533725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03794 168 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 73.016 4.84e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g03794 HLH 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03794 - - gmx:100807570 389.423