Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03791 ATGACCAGCGTAACGGACGCTGATCGAAACAATTACAACATGATAAACTTTGAAGAGACCGAGTTACGACTCGGTCTCCCTGGAGCAAGTGATCATGGCGAGGTACCGGTTAAAAACAGTTGTGGAAAAAGAGGTTTCTCAGAAACTGCTAATATGGATTTGAAGCTTAATCTTTCTTCAACTAATGACTCTGTTTCATCTTCTTCAACTATAGCTGCAAACAAAGGCATAGAGAAAACTTCTACTGCTTCTATTGCTACTGCACCTCCTCGCGCTAAGGCACAAGTTGTGGGATGGCCACCAGTGAGATCCTTTAGAAAGAACATAGTAAATGTTCAAAAGAGCAACAATGAATTACCATCAGAAGCAGAAAAGAGCACAAGTGGTGGAAATGGAAATGGAAATGGAGCATTTGTGAAAGTGAGTATGGATGGTGCACCATATCTACGCAAGGTGGACCTTAAGTTGTACAAGAGCTACCAAGAGCTGTCTGATGCGCTGGCTAAAATGTTTAGTTCATTCACAATTGACAATTGTGGGTCCCAAGTTACCAAAGACTTTATGAATGAAAGCAAATTGATTGACCTTTTGAACGGTTCTGATTATGTACCAACATATGAAGACAAAGATGGTGATTGGATGCTTGTTGGCGATGTTCCTTGGGAAATGTTCGTTCATTCCTGCAAGCGTCTTCGGATAATGAAAGGTTCTGAGGCAATTGGGCTAGCACCAAGGGCAGTTGAAAAGTGCAAGAACAGAAGCTGA 765 0.4183 MTSVTDADRNNYNMINFEETELRLGLPGASDHGEVPVKNSCGKRGFSETANMDLKLNLSSTNDSVSSSSTIAANKGIEKTSTASIATAPPRAKAQVVGWPPVRSFRKNIVNVQKSNNELPSEAEKSTSGGNGNGNGAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIDNCGSQVTKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVHSCKRLRIMKGSEAIGLAPRAVEKCKNRS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03791 254 Gene3D - 131 248 - -
Trre2g03791 254 ProSiteProfiles PB1 domain profile. 136 236 IPR000270 GO:0005515
Trre2g03791 254 MobiDBLite consensus disorder prediction 113 135 - -
Trre2g03791 254 SUPERFAMILY CAD & PB1 domains 129 235 - -
Trre2g03791 254 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 241 IPR003311 GO:0005634|GO:0006355
Trre2g03791 254 FunFam Auxin-responsive protein 131 246 - -
Trre2g03791 254 Pfam AUX/IAA family 19 245 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03791 Trre-Chr2 43473597 43476927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03791 106 244 B3 DNA Binding Superfamily AT4G23980 28.571 5.51e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Trre2g03791 AUX_IAA 1.4e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03791 K14484 - cave:132171332 332.413