Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03755 ATGGCAGCCACCACCACCAAGCCCAAGAAAACCACCACTTCTTCAAAGAAACCTCTCTCTCATCCAACCTATGCAGAGATGATAACTGAAGCAATCGTGAGCCTGAAAGAGAGAACTGGATCAAGCCAATACGCGATAACGAAATTCATCGAAGAGAAACACAAGGAGTTATCTCCAACTTACCGTAAGCTTGTTCTTCTCCATCTCAAAAAATTAGTCGCTTCTGAAAAGCTTGTTAAGGTCAAAAACTCCTTCAAACTCGCGCCGGCTACTAAGACTTCCACTGCTCCGGCTAAACCTAAAGCTGCTCCGGTGAAGGCTAAATCTGCTGCGGCCAAGCCTAAAGCTGTTGCCAAACCAGCCGCTAAGACTGCTTCAAAGCCTAAGGCTAAAACTGCTGTGAAACCTAAGGCTGCGGCGAAGCCAAAAGCTGTTGCGAAGCCAAAAGCTAAGACGGTTAAGGCTACGCCGGTGAAGAAGGCGGTTAAGAAGGTGCCTGCGAAGGGTGTGAAGAAGCCGAAGAGCGTGAAATCTCCTGTGAAGAAAGCGAAGAAGTGA 558 0.4803 MAATTTKPKKTTTSSKKPLSHPTYAEMITEAIVSLKERTGSSQYAITKFIEEKHKELSPTYRKLVLLHLKKLVASEKLVKVKNSFKLAPATKTSTAPAKPKAAPVKAKSAAAKPKAVAKPAAKTASKPKAKTAVKPKAAAKPKAVAKPKAKTVKATPVKKAVKKVPAKGVKKPKSVKSPVKKAKK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03755 185 MobiDBLite consensus disorder prediction 1 20 - -
Trre2g03755 185 Gene3D - 15 100 IPR036388 -
Trre2g03755 185 MobiDBLite consensus disorder prediction 1 22 - -
Trre2g03755 185 MobiDBLite consensus disorder prediction 91 185 - -
Trre2g03755 185 MobiDBLite consensus disorder prediction 142 158 - -
Trre2g03755 185 CDD H15 20 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre2g03755 185 PRINTS Histone H5 signature 159 178 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g03755 185 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g03755 185 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g03755 185 PRINTS Histone H5 signature 137 154 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g03755 185 PRINTS Histone H5 signature 107 121 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g03755 185 SUPERFAMILY "Winged helix" DNA-binding domain 17 101 IPR036390 -
Trre2g03755 185 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre2g03755 185 MobiDBLite consensus disorder prediction 164 185 - -
Trre2g03755 185 PANTHER HISTONE H1 7 171 - -
Trre2g03755 185 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre2g03755 185 Coils Coil 183 185 - -
Trre2g03755 185 Pfam linker histone H1 and H5 family 21 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03755 Trre-Chr2 42635135 42635775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03755 22 126 Single Myb Histone (SMH) Gene Family AT1G72740 32.110 1.21e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03755 K11275 - gmx:100810590 115.161