Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03738 ATGGGGACTCCAGTGAATATTATTGTGGGTTCTCATGTCTGGGTGGCAGACCCAGAGGAAGCTTGGGTTGACGGACAGGTATCAAAAATCAATGGAAAGGATGCCGAAATTGAAACCACCCACGGAAAAAAGGTTTATACACTGCCAGTTACGCTTCCTTATTTTACAGTTGTTGCAAAGTTGTCAAAAATATATCCTAAGGATATGGAAGCTCTTCCTGGTGGAGTGGATGATATGACTAAACTGTCCTATTTGCATGAGCCTGGAGTTCTGCAGAACTTAAAAGCTAGATATGAATTGAATAAAATATATACTTATACTGGAAATATTCTGATTGCCATAAATCCATTCCAAAGGCTGCCTCATATTTATGGTGCACACATGATGCAACAATACAAGGGAGCGCCACCTGGAGAATTAAGTCCTCATGTATTTGCAGTAGCTGATGTTGCATACAGAGCAATGGTTAATGAAGGGAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATTCCTAGCTTTCTTAGGTGGTAGAGCTGTGACTGAAGGAAGAACAGTCGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGCAATGCTAAAACTGTCAGGAATAACAATTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGACGAGAGTGGAAGAATCTCAGGAGCAGCCATCCGAACATACCTTCTAGAGAGATCTCGGGTCTGTCAAGTTAATGATCCTGAACGAAACTACCACTGCTTTTATCTCCTTTGTGCCGCACCACAGGAGGAAATTGAGAAATACAAATTGGGAAATCCTAAATCATTCCACTACCTTAATCAGTCACAATGCTATGAACTTGCCGATGTAAATGATGCTCATGAGTATCTTGCCACCCGCAGAGCTATGGGTATTGTTGGAATTAGTCAAAAAGATCAGGAAGCCATTTTCAGAGTTGTTGCTGCAATTCTTCATATTGGCAATATTGATTTTGCCAAAGGAAAGGAAATTGACTCATCAGTTCCAAAAGACAACAAAGCCAAATTCCACCTGAAAACAGCTGCTGAGCTTCTGATGTGTGATGCTGATGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACTCCTGAAGAAGTTATAAAACGAAGCCTTGACCCGGGAAGTGCAACAGTCAGCAGAGATGGACTGGCAAAGACAATTTATTCTCGGCTGTTTGATTGGCTGGTATACAAAATTAATAATTCAATTGGACAAGACCCCAATTCTAAGAGTTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATTGAACAGTTTTGAGCAGTTCTGCATTAACTTCACAAATGAAAAGTTGCAGCAACATTTCAATCAGAACTTGTTCAAGATGGAACAAGAAGAATACACAAAGGAGCAGATCAATTGGAGCTACATTGAATTTGTGGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCAGGAGGAATCATTGCTCTCCTCGATGAAGCTTGCATGTTTCCAAAGTCAACACATGAAACGTTTGCAAACAAGCTTTATCAAACATTTAAGAAAAACAAGCGCTTTATTAAGCCAAAATTGTCTCAAACAGATTTCACCATTGCTCATTATGCTGGGGAGGTTACTTACCAATCTGACCAATTTTTAGACAAAAATAAGGATTATGTGATTCCTGAACATCAAGATTTATTGATTGCTTCCAAATGTCCTTTTGTATCTGACCTTTTTCCACCACTTCCAGAAGACACATCAAAATCTTCCAAATTTTCTTCATTAGGATCTCGTTTTAAGATACAACTACAGCAACTAATGGAAACATTAAGTTCCACGGAACCCCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTCGAGAATGTCAATATTATGCATCAACTTCGTTGTGGTGGTGTGTTGGAGGCTATCAGAATCAGTTGTGCTGGCTACCCTACACGTCGCCCTTTCTTTGAATTTGCCAACAGATTTGGTCTCCTTGCCCTAGAGGCCATGGAAGCAAACTGTAATGAAAAGAATGCTTGCCAAAAGATTCTGGAAAAGATGGGGCTTAAAGGATATCAGATTGGAACAACAAAGGTATTCTTGAGAGCTGGTCAGATAGCTGAACTAGATGCTCGGAGAGCTCAATTACTTGGTAATGCAGCAAAAGTTATACAATGGCGTGTACGAACCCACCAAGCTCGTAAACATTATCTTACATTGCGAAAGAAGACCATATATGCGCAGTCATGGTGGAGAGGAAGACTTGCATTCAAACGATATGTGAAAATAATAAAGGAGGCCTCTGCTGTGAAAATTCAAAAGAACATACGCAGATATGAAGCTAGGAAGGCTTATAAAGAACTTCATATGTCAGTAGTTACTTTGCAAACAGCGTTAAGGGCCATTGCTGCTCGCAAGGAGTACAAATTTGAGAAACAGACCAAAGCTTCCGTCATTATTCAGGCTCGGTGGCGGTGCCATAAAGCTGCCTTACATTATAAGAGGCTTAAAAAAGGTTCAATTGTTACACAATGTAGATGGAGGGGGCGTTTAGCTAGGAGGGATCTTAGGAAACTGAAAATGGCTGCAAGAGATACTGGCGCACTTCAAGATGCAAAGAGTAAGCTTGAAAAACAAGTAGAGGAACTTACTCGGCGTCTCGAACTGGAAAAAGATTTAAGGGCTGCAAGAGATACTGGTGCACTTCAAGAAGCAAAGAGTAAGCTTGAAAAACAAGTAGAGGAACTTACTTGGCGTCTCCAACTGGAAAAAGGTTTAAGGATCAATCTACAAGAATTCAAAGCACAGGAGGTAGCAAAACTGCAGAATTCATTGCAGGAGATGAAGAAAAAATTTGATGAAACAAATGCTCTGCTCCTCAAGGAGCGAGAGAATGCAATAAAAGCTGCTATTGAAGTAGTATCTCCTATCACTAAAGAAGCGAAGGTTCTTGTTGAAGATAGAGAGAAGATTAAGACACTGAAAATGGAAATTGAGATCCTAAAGACTTCACTCATGTTAGAGAAACAGAAAGCCAAAGACTTTGAAAGAAAATATAATCAAGCTAAAATTTGTAGTGAAGAAAGAGGTAAAAGGTTAGAAGACACAGAGAAGAAGCTTCGTCAGCTCCAAGAATCAATGACCAGGTTTACTTCTCAGAAGACTTTATAG 3261 0.3968 MGTPVNIIVGSHVWVADPEEAWVDGQVSKINGKDAEIETTHGKKVYTLPVTLPYFTVVAKLSKIYPKDMEALPGGVDDMTKLSYLHEPGVLQNLKARYELNKIYTYTGNILIAINPFQRLPHIYGAHMMQQYKGAPPGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMQFLAFLGGRAVTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDESGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCAAPQEEIEKYKLGNPKSFHYLNQSQCYELADVNDAHEYLATRRAMGIVGISQKDQEAIFRVVAAILHIGNIDFAKGKEIDSSVPKDNKAKFHLKTAAELLMCDADALEDALCKRVMITPEEVIKRSLDPGSATVSRDGLAKTIYSRLFDWLVYKINNSIGQDPNSKSLIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQNLFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKKNKRFIKPKLSQTDFTIAHYAGEVTYQSDQFLDKNKDYVIPEHQDLLIASKCPFVSDLFPPLPEDTSKSSKFSSLGSRFKIQLQQLMETLSSTEPHYIRCVKPNNLLKPAIFENVNIMHQLRCGGVLEAIRISCAGYPTRRPFFEFANRFGLLALEAMEANCNEKNACQKILEKMGLKGYQIGTTKVFLRAGQIAELDARRAQLLGNAAKVIQWRVRTHQARKHYLTLRKKTIYAQSWWRGRLAFKRYVKIIKEASAVKIQKNIRRYEARKAYKELHMSVVTLQTALRAIAARKEYKFEKQTKASVIIQARWRCHKAALHYKRLKKGSIVTQCRWRGRLARRDLRKLKMAARDTGALQDAKSKLEKQVEELTRRLELEKDLRAARDTGALQEAKSKLEKQVEELTWRLQLEKGLRINLQEFKAQEVAKLQNSLQEMKKKFDETNALLLKERENAIKAAIEVVSPITKEAKVLVEDREKIKTLKMEIEILKTSLMLEKQKAKDFERKYNQAKICSEERGKRLEDTEKKLRQLQESMTRFTSQKTL 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03738 1086 PANTHER MYOSIN 66 1066 - -
Trre2g03738 1086 SMART MYSc_2a 69 745 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g03738 1086 Gene3D Kinesin motor domain 77 674 IPR036961 -
Trre2g03738 1086 Coils Coil 961 995 - -
Trre2g03738 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 797 894 IPR027417 -
Trre2g03738 1086 Gene3D - 679 742 - -
Trre2g03738 1086 Pfam Myosin head (motor domain) 76 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g03738 1086 Gene3D - 747 795 - -
Trre2g03738 1086 Gene3D - 796 844 - -
Trre2g03738 1086 Gene3D - 845 894 - -
Trre2g03738 1086 Gene3D Myosin VI head, motor domain, U50 subdomain 324 613 - -
Trre2g03738 1086 ProSiteProfiles IQ motif profile. 843 870 IPR000048 GO:0005515
Trre2g03738 1086 Pfam IQ calmodulin-binding motif 749 767 IPR000048 GO:0005515
Trre2g03738 1086 Pfam IQ calmodulin-binding motif 844 864 IPR000048 GO:0005515
Trre2g03738 1086 Pfam IQ calmodulin-binding motif 870 887 IPR000048 GO:0005515
Trre2g03738 1086 Pfam IQ calmodulin-binding motif 797 816 IPR000048 GO:0005515
Trre2g03738 1086 FunFam unconventional myosin-Va 846 893 - -
Trre2g03738 1086 FunFam Myosin 2 324 438 - -
Trre2g03738 1086 FunFam unconventional myosin-Va 797 845 - -
Trre2g03738 1086 ProSiteProfiles Myosin motor domain profile. 74 744 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g03738 1086 FunFam Class V myosin 451 586 - -
Trre2g03738 1086 CDD MYSc_Myo11 88 732 IPR036018 -
Trre2g03738 1086 Coils Coil 896 923 - -
Trre2g03738 1086 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 69 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre2g03738 1086 Coils Coil 1056 1083 - -
Trre2g03738 1086 PRINTS Myosin heavy chain signature 441 469 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g03738 1086 PRINTS Myosin heavy chain signature 208 235 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g03738 1086 PRINTS Myosin heavy chain signature 161 186 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g03738 1086 PRINTS Myosin heavy chain signature 104 123 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g03738 1086 PRINTS Myosin heavy chain signature 494 522 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g03738 1086 Gene3D - 451 635 - -
Trre2g03738 1086 ProSiteProfiles IQ motif profile. 770 799 IPR000048 GO:0005515
Trre2g03738 1086 SMART iq_5 817 839 IPR000048 GO:0005515
Trre2g03738 1086 SMART iq_5 842 864 IPR000048 GO:0005515
Trre2g03738 1086 SMART iq_5 865 887 IPR000048 GO:0005515
Trre2g03738 1086 SMART iq_5 794 816 IPR000048 GO:0005515
Trre2g03738 1086 SMART iq_5 746 768 IPR000048 GO:0005515
Trre2g03738 1086 SMART iq_5 769 791 IPR000048 GO:0005515
Trre2g03738 1086 Gene3D - 264 322 - -
Trre2g03738 1086 ProSiteProfiles IQ motif profile. 795 824 IPR000048 GO:0005515
Trre2g03738 1086 Pfam Myosin N-terminal SH3-like domain 9 45 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre2g03738 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 797 IPR027417 -
Trre2g03738 1086 ProSiteProfiles IQ motif profile. 866 895 IPR000048 GO:0005515
Trre2g03738 1086 ProSiteProfiles IQ motif profile. 749 774 IPR000048 GO:0005515
Trre2g03738 1086 FunFam Myosin heavy chain 264 319 - -
Trre2g03738 1086 ProSiteProfiles IQ motif profile. 818 847 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03738 Trre-Chr2 42469447 42482738 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03738 1 1080 Myosins gene family AT1G54560 73.981 0.0 1664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03738 K10357 - gmx:100816792 1757.65