Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre2g03737 | ATGGGGACTCCAGTGAATATTATTGTGGGTTCTCATGTCTGGGTGGCAGACCCAGAGGAAGCTTGGGTTGACGGACAGGTATCAAAAATCAATGGAAAGGATGCCGAAATTGAAACCACCCACGGAAAAAAGGTTGTTGCAAAGTTGTCAAAAATATATCCTAAGGATATGGAAGCTCTTCCTGGTGGAGTGGATGATATGACTAAACTGTCCTATTTGCATGAGCCTGGAGTTCTGCAGAACTTAAAAGCTAGATATGAATTGAATAAAATATATACTTATACTGGAAATATTCTGATTGCCATAAATCCATTCCAAAGGCTGCCTCATATTTATGGTGCACACATGATGCAACAATACAAGGGAGCGCCACCTGGAGAATTAAGTCCTCATGTATTTGCAGTAGCTGATGTTGCATACAGAGCAATGGTTAATGAAGGGAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATTCCTAGCTTTCTTAGGTGGTAGAGCTGTGACTGAAGGAAGAACAGTCGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGCAATGCTAAAACTGTCAGGAATAACAATTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGACGAGAGTGGAAGAATCTCAGGAGCAGCCATCCGAACATACCTTCTAGAGAGATCTCGGGTCTGTCAAGTTAATGATCCTGAACGAAACTACCACTGCTTTTATCTCCTTTGTGCCGCACCACAGGAGGAAATTGAGAAATACAAATTGGGAAATCCTAAATCATTCCACTACCTTAATCAGTCACAATGCTATGAACTTGCCGATGTAAATGATGCTCATGAGTATCTTGCCACCCGCAGAGCTATGGGTATTGTTGGAATTAGTCAAAAAGATCAGGAAGCCATTTTCAGAGTTGTTGCTGCAATTCTTCATATTGGCAATATTGATTTTGCCAAAGGAAAGGAAATTGACTCATCAGTTCCAAAAGACAACAAAGCCAAATTCCACCTGAAAACAGCTGCTGAGCTTCTGATGTGTGATGCTGATGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACTCCTGAAGAAGTTATAAAACGAAGCCTTGACCCGGGAAGTGCAACAGTCAGCAGAGATGGACTGGCAAAGACAATTTATTCTCGGCTGTTTGATTGGCTGGTATACAAAATTAATAATTCAATTGGACAAGACCCCAATTCTAAGAGTTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATTGAACAGTTTTGAGCAGTTCTGCATTAACTTCACAAATGAAAAGTTGCAGCAACATTTCAATCAGAACTTGTTCAAGATGGAACAAGAAGAATACACAAAGGAGCAGATCAATTGGAGCTACATTGAATTTGTGGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCAGGAGGAATCATTGCTCTCCTCGATGAAGCTTGCATGTTTCCAAAGTCAACACATGAAACGTTTGCAAACAAGCTTTATCAAACATTTAAGAAAAACAAGCGCTTTATTAAGCCAAAATTGTCTCAAACAGATTTCACCATTGCTCATTATGCTGGGGAGGTTACTTACCAATCTGACCAATTTTTAGACAAAAATAAGGATTATGTGATTCCTGAACATCAAGATTTATTGATTGCTTCCAAATGTCCTTTTGTATCTGACCTTTTTCCACCACTTCCAGAAGACACATCAAAATCTTCCAAATTTTCTTCATTAGGATCTCGTTTTAAGATACAACTACAGCAACTAATGGAAACATTAAGTTCCACGGAACCCCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTCGAGAATGTCAATATTATGCATCAACTTCGTTGTGGTGGTGTGTTGGAGGCTATCAGAATCAGTTGTGCTGGCTACCCTACACGTCGCCCTTTCTTTGAATTTGCCAACAGATTTGGTCTCCTTGCCCTAGAGGCCATGGAAGCAAACTGTAATGAAAAGAATGCTTGCCAAAAGATTCTGGAAAAGATGGGGCTTAAAGGATATCAGATTGGAACAACAAAGGTATTCTTGAGAGCTGGTCAGATAGCTGAACTAGATGCTCGGAGAGCTCAATTACTTGGTAATGCAGCAAAAGTTATACAATGGCGTGTACGAACCCACCAAGCTCGTAAACATTATCTTACATTGCGAAAGAAGACCATATATGCGCAGTCATGGTGGAGAGGAAGACTTGCATTCAAACGATATGTGAAAATAATAAAGGAGGCCTCTGCTGTGAAAATTCAAAAGAACATACGCAGATATGAAGCTAGGAAGGCTTATAAAGAACTTCATATGTCAGTAGTTACTTTGCAAACAGCGTTAAGGGCCATTGCTGCTCGCAAGGAGTACAAATTTGAGAAACAGACCAAAGCTTCCGTCATTATTCAGGCTCGGTGGCGGTGCCATAAAGCTGCCTTACATTATAAGAGGCTTAAAAAAGGTTCAATTGTTACACAATGTAGATGGAGGGGGCGTTTAGCTAGGAGGGATCTTAGGAAACTGAAAATGGCTGCAAGAGATACTGGCGCACTTCAAGATGCAAAGAGTAAGCTTGAAAAACAAGTAGAGGAACTTACTCGGCGTCTCGAACTGGAAAAAGATTTAAGGGCTGCAAGAGATACTGGTGCACTTCAAGAAGCAAAGAGTAAGCTTGAAAAACAAGTAGAGGAACTTACTTGGCGTCTCCAACTGGAAAAAGGTTTAAGGATCAATCTACAAGAATTCAAAGCACAGGAGGTAGCAAAACTGCAGAATTCATTGCAGGAGATGAAGAAAAAATTTGATGAAACAAATGCTCTGCTCCTCAAGGAGCGAGAGAATGCAATAAAAGCTGCTATTGAAGTAGTATCTCCTATCACTAAAGAAGCGAAGGTTCTTGTTGAAGATAGAGAGAAGATTAAGACACTGAAAATGGAAATTGAGATCCTAAAGACTTCACTCATGTTAGAGAAACAGAAAGCCAAAGACTTTGAAAGAAAATATAATCAAGCTAAAATTTGTAGTGAAGAAAGAGGTAAAAGGTTAGAAGACACAGAGAAGAAGCTTCGTCAGCTCCAAGAATCAATGACCAGGTTTACTTCTCAGAAGACTTTATAG | 3225 | 0.3972 | MGTPVNIIVGSHVWVADPEEAWVDGQVSKINGKDAEIETTHGKKVVAKLSKIYPKDMEALPGGVDDMTKLSYLHEPGVLQNLKARYELNKIYTYTGNILIAINPFQRLPHIYGAHMMQQYKGAPPGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMQFLAFLGGRAVTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDESGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCAAPQEEIEKYKLGNPKSFHYLNQSQCYELADVNDAHEYLATRRAMGIVGISQKDQEAIFRVVAAILHIGNIDFAKGKEIDSSVPKDNKAKFHLKTAAELLMCDADALEDALCKRVMITPEEVIKRSLDPGSATVSRDGLAKTIYSRLFDWLVYKINNSIGQDPNSKSLIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQNLFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKKNKRFIKPKLSQTDFTIAHYAGEVTYQSDQFLDKNKDYVIPEHQDLLIASKCPFVSDLFPPLPEDTSKSSKFSSLGSRFKIQLQQLMETLSSTEPHYIRCVKPNNLLKPAIFENVNIMHQLRCGGVLEAIRISCAGYPTRRPFFEFANRFGLLALEAMEANCNEKNACQKILEKMGLKGYQIGTTKVFLRAGQIAELDARRAQLLGNAAKVIQWRVRTHQARKHYLTLRKKTIYAQSWWRGRLAFKRYVKIIKEASAVKIQKNIRRYEARKAYKELHMSVVTLQTALRAIAARKEYKFEKQTKASVIIQARWRCHKAALHYKRLKKGSIVTQCRWRGRLARRDLRKLKMAARDTGALQDAKSKLEKQVEELTRRLELEKDLRAARDTGALQEAKSKLEKQVEELTWRLQLEKGLRINLQEFKAQEVAKLQNSLQEMKKKFDETNALLLKERENAIKAAIEVVSPITKEAKVLVEDREKIKTLKMEIEILKTSLMLEKQKAKDFERKYNQAKICSEERGKRLEDTEKKLRQLQESMTRFTSQKTL | 1074 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre2g03737 | 1074 | ProSiteProfiles | IQ motif profile. | 831 | 858 | IPR000048 | GO:0005515 | |
| Trre2g03737 | 1074 | FunFam | unconventional myosin-Va | 834 | 881 | - | - | |
| Trre2g03737 | 1074 | Pfam | Myosin head (motor domain) | 64 | 720 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre2g03737 | 1074 | CDD | MYSc_Myo11 | 76 | 720 | IPR036018 | - | |
| Trre2g03737 | 1074 | Gene3D | - | 833 | 882 | - | - | |
| Trre2g03737 | 1074 | Gene3D | - | 784 | 832 | - | - | |
| Trre2g03737 | 1074 | Gene3D | - | 735 | 783 | - | - | |
| Trre2g03737 | 1074 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre2g03737 | 1074 | ProSiteProfiles | IQ motif profile. | 854 | 883 | IPR000048 | GO:0005515 | |
| Trre2g03737 | 1074 | PANTHER | MYOSIN | 54 | 1054 | - | - | |
| Trre2g03737 | 1074 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre2g03737 | 1074 | PRINTS | Myosin heavy chain signature | 482 | 510 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre2g03737 | 1074 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre2g03737 | 1074 | PRINTS | Myosin heavy chain signature | 196 | 223 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre2g03737 | 1074 | PRINTS | Myosin heavy chain signature | 429 | 457 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre2g03737 | 1074 | Gene3D | - | 252 | 310 | - | - | |
| Trre2g03737 | 1074 | Gene3D | - | 11 | 55 | IPR008989 | GO:0003774|GO:0005524|GO:0051015 | |
| Trre2g03737 | 1074 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 37 | 785 | IPR027417 | - | |
| Trre2g03737 | 1074 | SMART | MYSc_2a | 57 | 733 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre2g03737 | 1074 | Gene3D | Kinesin motor domain | 65 | 662 | IPR036961 | - | |
| Trre2g03737 | 1074 | Coils | Coil | 949 | 983 | - | - | |
| Trre2g03737 | 1074 | ProSiteProfiles | IQ motif profile. | 758 | 787 | IPR000048 | GO:0005515 | |
| Trre2g03737 | 1074 | Coils | Coil | 884 | 911 | - | - | |
| Trre2g03737 | 1074 | SMART | iq_5 | 830 | 852 | IPR000048 | GO:0005515 | |
| Trre2g03737 | 1074 | SMART | iq_5 | 782 | 804 | IPR000048 | GO:0005515 | |
| Trre2g03737 | 1074 | SMART | iq_5 | 853 | 875 | IPR000048 | GO:0005515 | |
| Trre2g03737 | 1074 | SMART | iq_5 | 734 | 756 | IPR000048 | GO:0005515 | |
| Trre2g03737 | 1074 | SMART | iq_5 | 805 | 827 | IPR000048 | GO:0005515 | |
| Trre2g03737 | 1074 | SMART | iq_5 | 757 | 779 | IPR000048 | GO:0005515 | |
| Trre2g03737 | 1074 | ProSiteProfiles | Myosin motor domain profile. | 62 | 732 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre2g03737 | 1074 | FunFam | Myosin 2 | 312 | 426 | - | - | |
| Trre2g03737 | 1074 | Gene3D | - | 667 | 730 | - | - | |
| Trre2g03737 | 1074 | ProSiteProfiles | IQ motif profile. | 806 | 835 | IPR000048 | GO:0005515 | |
| Trre2g03737 | 1074 | Pfam | IQ calmodulin-binding motif | 858 | 875 | IPR000048 | GO:0005515 | |
| Trre2g03737 | 1074 | Pfam | IQ calmodulin-binding motif | 832 | 852 | IPR000048 | GO:0005515 | |
| Trre2g03737 | 1074 | Pfam | IQ calmodulin-binding motif | 737 | 755 | IPR000048 | GO:0005515 | |
| Trre2g03737 | 1074 | Pfam | IQ calmodulin-binding motif | 785 | 804 | IPR000048 | GO:0005515 | |
| Trre2g03737 | 1074 | Gene3D | - | 439 | 623 | - | - | |
| Trre2g03737 | 1074 | ProSiteProfiles | IQ motif profile. | 737 | 762 | IPR000048 | GO:0005515 | |
| Trre2g03737 | 1074 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 785 | 882 | IPR027417 | - | |
| Trre2g03737 | 1074 | FunFam | unconventional myosin-Va | 785 | 833 | - | - | |
| Trre2g03737 | 1074 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 312 | 601 | - | - | |
| Trre2g03737 | 1074 | Pfam | Myosin N-terminal SH3-like domain | 9 | 51 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre2g03737 | 1074 | FunFam | Class V myosin | 439 | 574 | - | - | |
| Trre2g03737 | 1074 | FunFam | Myosin heavy chain | 252 | 307 | - | - | |
| Trre2g03737 | 1074 | ProSiteProfiles | IQ motif profile. | 783 | 812 | IPR000048 | GO:0005515 | |
| Trre2g03737 | 1074 | Coils | Coil | 1044 | 1071 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre2g03737 | Trre-Chr2 | 42469447 | 42482738 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre2g03737 | 1 | 1068 | Myosins gene family | AT1G54560 | 74.813 | 0.0 | 1674 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre2g03737 | K10357 | - | gmx:100816792 | 1766.51 |