Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03718 ATGAATCATCTCAAGGATTGGCAGCCACCGAGCAACGCGACGCGGTGGCAAAGTCAGCTTCATTGTAACTGGACTGGAGTTGGTTGTAACTCTAAAGGCTTTGTAGAGAGTATTGAACTCTACAACATGAACTTAAGTGGTATTGTTTCAAACCACATTCAATCCCTTTCAAGTTTGTCTTGTTTCAACATAAGTTGTAATAATTTTGCTTCAACACTTCCAAAATCACTTTCAAATCTCACTTCACTAAAGAGCTTTGATGTCAGTCAAAACTACTTCACTGGCAACTTTCCGACCGGTTTCGGAAGAGTTGCAGGGCTGAGATCAATCAATGCATCAAGCAATGATTTTTCAGGTCTTCTTCCTGAGGATATTGGAAATGCTACATTCCTCGAAAGCCTCGATTTTCGAGGAAACTACTTTGTAAGTCCAATTCCAAAGAGTTTTAAAAATTTGCAAAATCTTAAATTTTTAGGCCTTTCAGGCAATAACTTCACAGGAAAGATTCCAGAATATCTTGGTGAGCTCAGTTCTTTAGAGACATTGATTATGGGATACAATGAGTTTGAAGGTGAGATTCCTGCAGAATTTGGCAACATGACAAATCTTCAATATCTTGATTTAGCATTAGGAACTCTCAGTGGACAAATTCCAACTGAATTAGGTAAGTTAAAGAAACTAACTACAATTTACTTATACCGAAACAAATTCACCGCAAAAATTCCACCTCAACTTGGCAACATTATGTCACTAGAATTTCTAGACCTCTCTGACAATCAGCTCACCGGCGAAATACCAGAAGAGCTTGCGAAATTGGAAAACCTGCAGCTTTTGAATTTGATGAGCAATAAACTAACAGGTCATGTTCCTGAGAAGCTTGGTGAATTGAAAAACGTAATGGTTCTTGAGTTATGGAAAAATTCTTTAGAAGGTTCTTTGCCATTGAATCTTGGAAGAAATTCTCCTTTGCAGTGGTTAGATGTGTCCTCTAACTCATTGTCTGGTGAGATTCCTCCAGGTTTGTGTACAACAGGCAATCTCACTAAACTAATTCTTTTCAACAATTCATTCTCCGGTCCAATTCCAAGTGGACTTTCAAATTGTTCGTCGTTGGTGCGTGTTCGGGTTCAAAACAATCTTATTTCCGGGACTATTCCGGTTGGATTTGGAAATCTTCTAAGCCTACAACGGCTAGAGTTGGCGAAGAACAATCTCACTGGACAAATTCCTATTGATATTACCTCTTCCACATCACTTTCCTTCATTGATTTATCTTGGAACCACCTTGAATCATCTTTACCTTCAGAAATTCTTTCAATTCCAACTCTTCAAACCTTCATTGCCTCTCACAACAGCTTTGGAGGAACTATCCCAAATGAGTTCCAAGGTTGTCCATCTCTCTCTGTGCTTGATCTTTCAAATGCAAATATCTCCGGTTCAATCCCGGAAAGTATAGCTTCTTGTCAAAAATTAGTCAACCTTAACCTTAGAAACAATCATTTGACTGGTGGAATACCAAAATCAATCACAAACATGCCAACCTTATCAGTTCTTGATCTGTCCAACAATTCACTGACCGGTCGGATACCTGAAAACTTTGGGAGCTCCCCGGCTCTCGAAACAATGAACCTGTCCTATAACAAACTGGAAGGTCCAGTACCCTCAAATGGGATTCTACTTACAATGAATCCTAACGATTTTATCGGAAATGCCGGTCTTTGCGGAGGCATTCTCCCTTCATGTTCTCAGAGTTTGACTGCCACAAGCCACAAAAGAAGCTCACACAAAAGAAGCTCACATATTTTGGAGGCAAATGGTTATACAATAGATGTTATTTGTGTAACAGCTCCATTCATGATTGGTTCAAACATAACAATAAAGATTGGCCTTGGAGGCATGGGTGGTGCTGGTATTGTTTACAAAGCTGAAATCCATAAACCTCAGATAACAGTAGCAGTGAAGAAACTATGGAGGTCAAGCACAGACATAGAAAATGGTGGGAATGATGTATTGAGAGAAGTGGAACTTCTAGGAAGATTGAGGCATAGAAATATTGTGAGGCTATTAGGGTATGTTCACAATGAAAGGGATGTGATAATGGTTTACGAGTACATGCCAAATGGAAACCTCGGAACCGCCCTGCATGGTGAACAAACTGCAAGGTTGCTTGTAGATTGGGTCTCAAGGGATATCAAGTCTAATAACATACTCCTTGACGCGAATTTGGAGGCAAGGATAGCAGATTTCGGGTTGGCACGAATGATGATTCAAAAGAATGAGACTGTTACAATGGTGGCTGGATCTTATGGTTATATTGCACCAGAATATGGATACACTCTGAAGGTTGATGAGAAGATTGACATATACAGTTTTGGAGTGGTACTTTTGGAGCTGATAACTGAAGCACTAGATCCCACAATAGCTGGTCAGTGCAAACATGTTCAAGAGGAAATGCTTCTTGTTCTTCGGATTGCACTACTATGTACGGCGAAGCTTCCTAAGGAAAGACCATCCATGAGAGACATCATCACAATGCTTGGAGAAGCAAAGCCAAGAAGGAAAAGCATTTGCGGTAATGGTAGACAAGAGAGTAGCATGGAAAAGGGAACAACCTTTACCACATCCCCAGTAGCAAGTCTTTTGTAG 2646 0.401 MNHLKDWQPPSNATRWQSQLHCNWTGVGCNSKGFVESIELYNMNLSGIVSNHIQSLSSLSCFNISCNNFASTLPKSLSNLTSLKSFDVSQNYFTGNFPTGFGRVAGLRSINASSNDFSGLLPEDIGNATFLESLDFRGNYFVSPIPKSFKNLQNLKFLGLSGNNFTGKIPEYLGELSSLETLIMGYNEFEGEIPAEFGNMTNLQYLDLALGTLSGQIPTELGKLKKLTTIYLYRNKFTAKIPPQLGNIMSLEFLDLSDNQLTGEIPEELAKLENLQLLNLMSNKLTGHVPEKLGELKNVMVLELWKNSLEGSLPLNLGRNSPLQWLDVSSNSLSGEIPPGLCTTGNLTKLILFNNSFSGPIPSGLSNCSSLVRVRVQNNLISGTIPVGFGNLLSLQRLELAKNNLTGQIPIDITSSTSLSFIDLSWNHLESSLPSEILSIPTLQTFIASHNSFGGTIPNEFQGCPSLSVLDLSNANISGSIPESIASCQKLVNLNLRNNHLTGGIPKSITNMPTLSVLDLSNNSLTGRIPENFGSSPALETMNLSYNKLEGPVPSNGILLTMNPNDFIGNAGLCGGILPSCSQSLTATSHKRSSHKRSSHILEANGYTIDVICVTAPFMIGSNITIKIGLGGMGGAGIVYKAEIHKPQITVAVKKLWRSSTDIENGGNDVLREVELLGRLRHRNIVRLLGYVHNERDVIMVYEYMPNGNLGTALHGEQTARLLVDWVSRDIKSNNILLDANLEARIADFGLARMMIQKNETVTMVAGSYGYIAPEYGYTLKVDEKIDIYSFGVVLLELITEALDPTIAGQCKHVQEEMLLVLRIALLCTAKLPKERPSMRDIITMLGEAKPRRKSICGNGRQESSMEKGTTFTTSPVASLL 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03718 881 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 140 240 - -
Trre2g03718 881 SUPERFAMILY Protein kinase-like (PK-like) 632 847 IPR011009 -
Trre2g03718 881 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 1 139 - -
Trre2g03718 881 Pfam Leucine rich repeat 131 188 IPR001611 GO:0005515
Trre2g03718 881 Pfam Leucine rich repeat 490 549 IPR001611 GO:0005515
Trre2g03718 881 Pfam Leucine rich repeat 370 429 IPR001611 GO:0005515
Trre2g03718 881 ProSiteProfiles Protein kinase domain profile. 625 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03718 881 ProSiteProfiles Leucine-rich repeat profile. 250 273 IPR001611 GO:0005515
Trre2g03718 881 SUPERFAMILY RNI-like 37 343 - -
Trre2g03718 881 SUPERFAMILY RNI-like 241 551 - -
Trre2g03718 881 MobiDBLite consensus disorder prediction 858 881 - -
Trre2g03718 881 Gene3D Ribonuclease Inhibitor 320 585 IPR032675 -
Trre2g03718 881 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 324 585 - -
Trre2g03718 881 SMART serkin_6 625 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03718 881 Gene3D Ribonuclease Inhibitor 121 215 IPR032675 -
Trre2g03718 881 SMART LRR_typ_2 224 248 IPR003591 -
Trre2g03718 881 SMART LRR_typ_2 272 296 IPR003591 -
Trre2g03718 881 SMART LRR_typ_2 152 176 IPR003591 -
Trre2g03718 881 SMART LRR_typ_2 392 416 IPR003591 -
Trre2g03718 881 SMART LRR_typ_2 512 536 IPR003591 -
Trre2g03718 881 SMART LRR_typ_2 417 440 IPR003591 -
Trre2g03718 881 SMART LRR_typ_2 56 80 IPR003591 -
Trre2g03718 881 PRINTS Leucine-rich repeat signature 512 525 - -
Trre2g03718 881 PRINTS Leucine-rich repeat signature 251 264 - -
Trre2g03718 881 ProSitePatterns Protein kinases ATP-binding region signature. 628 655 IPR017441 GO:0005524
Trre2g03718 881 Pfam Leucine Rich repeat 249 265 IPR001611 GO:0005515
Trre2g03718 881 Pfam Protein kinase domain 632 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03718 881 Gene3D Ribonuclease Inhibitor 216 316 IPR032675 -
Trre2g03718 881 MobiDBLite consensus disorder prediction 854 881 - -
Trre2g03718 881 Gene3D Transferase(Phosphotransferase) domain 1 619 852 - -
Trre2g03718 881 FunFam Leucine-rich repeat receptor protein kinase EMS1 241 323 - -
Trre2g03718 881 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 131 841 - -
Trre2g03718 881 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Trre2g03718 881 Gene3D Ribonuclease Inhibitor 2 106 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03718 Trre-Chr2 42020018 42022991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03718 2 857 Receptor kinase-like Gene Family AT1G08590 57.862 0.0 1032
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre2g03718 Pkinase 7.9e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03718 - - gmx:100793873 1354.73