Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03710 ATGCCTCATCCAAGGGTTATTAAGGCCTTTGATGCTATGGAGGCCTTAGGAATCTCTAAGAAAGAGGTGAAACCAGTGTTGAAAAATTTGTTTAAACTGTATGATAACAAATGGGAGCTTATTGAAGACGACAACTATCGGGCACTTATAGATGCATACTTTGAGTCAAAGGAAGATAAGAAGCAAGAAGAACATAAGAGAAAAGCTCCAATAAGTTGTCATGATGGTGAAAGACCAAAACAGAAACGTCACTTGGATACAGACAACCAGATTTCATCAGCTGACAACTCAAGACATGTGTTATCTGTAGAAGAGGCTGGCATACCTCCAAAGACTTTTAAACAGGAAACCATGATACCATCACAAACTTCCAGGCAAGATAAGAAGTCTGCAACCAGTTCACATGAATTTCAGAGAAGGTTGAGTGACGATAAAAGGACCTCAAGTTTTCACATGACTGCTAGAGATATAAAAAGTTATCCTGGGACATCATCATCTGCAGGGCATCACGAAGACCAAATTGAAGACCAAATTGATGAACCTAGCAATCCTTGTATTCAGAGGAAAATTATGTCAAGTGATCACTATCAGAAGAATCTTATAACATCAGGAACTGAGAAACCTAAGTTTCATCATGGATCTGTTTCGACAAGTTACAATGGTTCACCTGATGCCTCAAATGGAAATCATTCTATCAAATCCCTCACAGAGGTGTATCAGAATACACACAAGATAGAAGATAAGCCAACATGCAATAATAACACCAGAACCAGTAAGGGTAATATTGATATTGCTTCTTCACCCTTGGGAGAAGTTAAAATTTCTTTAAATTGTGATGCTGCATTCGGACAACCAAATTTCCATATTCCTAATTTGGATGGTGTTATGAAATCTGTGGAGGAAAAATACCTGAGGACTTCCAAGACTGTTGAGCCCCAACTATCGGTGACGAAGCTATTAGACGATTTATGCAGAAGTTTTTTGAAGATGGGCATGAATTTGAATCGAAAGGGGTCAAAGCAAGCTCTTGCCGAGGATAAAAAGAAATCCTTTCGATATGTCGATGACATAACAAAAGGTTCAGAAAATGTTAAAATATCATTATTAGATGAAACTAACAGTGAGGATTTTCCAAAGTTTAATTACATTCCATGTAATCTAATGTATCAAAGTGCTAATGTCAACATTTCACTTGCTCGGATTGCGGATCAAGGTTGCTGTGCTGGTTGTTCAGGCGACTGCCTTTCCTTACCATTTCCTTGTGCATGCTCTCAAGACACTGGTGGGGAGTTTGCTTACTCTTCACAAGGTTTGTTGAAAGAAAAGTTTTTAAAAGATTGCATGTCTATGATAATGGAACCTCAAGATCATCATTATGTGTACTGTAATGAATGCCCAATTGAGAGGTCTAAGAATGAAACCAAACCCGAACCGTGCAAGGGACATCTGGTTAGGAAGTTTATAAAGGAGTGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGGGGTATAAGCCGTAAATTGCAGGTGTTCTTGACTGAAGAAGGAAAGGGCTGGGGCGTTAGACCACTAGAAGATTTGCCCAAGGGATCCTTTGTATGTGAATACGCTGGGGAAATTTTAACAAATACAGAATTGTATGATAGGATTGTACAAAGTACCGGCAATGAAAGGCATACATATCCTGTAACGCTTGATGCAGACTGGGGCTCAGAAGTGGGATTAAAGGATGAAGAGGCATTATGCTTGGATGCAACACATAATGGGAATGTTGCAAGATTCATCAATCATAGATGCCATGATGCAAATCTGATAGATATTCCTGTTGAAGTGGAGACACCTGACCGCCACTATTATCATCTTGCCCTGTTTACAAACAAAAATGTGAGTGCATACGAGGAGTTGACATGGGATTATGGTATTGACTTTGATGATCATAACCATCCTATTAAAGCATTCAAATGTTGTTGTGGAAGCGCTTTCTGCCGCGATAAGAAACAAACAGGAACTAGATTTACAAAGACTAAAAAACTCAAGCATACATATATAGAGTAG 2073 0.3917 MPHPRVIKAFDAMEALGISKKEVKPVLKNLFKLYDNKWELIEDDNYRALIDAYFESKEDKKQEEHKRKAPISCHDGERPKQKRHLDTDNQISSADNSRHVLSVEEAGIPPKTFKQETMIPSQTSRQDKKSATSSHEFQRRLSDDKRTSSFHMTARDIKSYPGTSSSAGHHEDQIEDQIDEPSNPCIQRKIMSSDHYQKNLITSGTEKPKFHHGSVSTSYNGSPDASNGNHSIKSLTEVYQNTHKIEDKPTCNNNTRTSKGNIDIASSPLGEVKISLNCDAAFGQPNFHIPNLDGVMKSVEEKYLRTSKTVEPQLSVTKLLDDLCRSFLKMGMNLNRKGSKQALAEDKKKSFRYVDDITKGSENVKISLLDETNSEDFPKFNYIPCNLMYQSANVNISLARIADQGCCAGCSGDCLSLPFPCACSQDTGGEFAYSSQGLLKEKFLKDCMSMIMEPQDHHYVYCNECPIERSKNETKPEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGISRKLQVFLTEEGKGWGVRPLEDLPKGSFVCEYAGEILTNTELYDRIVQSTGNERHTYPVTLDADWGSEVGLKDEEALCLDATHNGNVARFINHRCHDANLIDIPVEVETPDRHYYHLALFTNKNVSAYEELTWDYGIDFDDHNHPIKAFKCCCGSAFCRDKKQTGTRFTKTKKLKHTYIE 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03710 690 MobiDBLite consensus disorder prediction 129 152 - -
Trre2g03710 690 Gene3D - 1 59 IPR043017 -
Trre2g03710 690 ProSiteProfiles SET domain profile. 512 646 IPR001214 GO:0005515
Trre2g03710 690 MobiDBLite consensus disorder prediction 58 89 - -
Trre2g03710 690 Pfam SET domain 524 646 IPR001214 GO:0005515
Trre2g03710 690 Pfam Pre-SET motif 357 504 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre2g03710 690 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 684 IPR025776 -
Trre2g03710 690 SMART preset_2 354 496 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre2g03710 690 MobiDBLite consensus disorder prediction 204 227 - -
Trre2g03710 690 Pfam Ubiquitin-binding WIYLD domain 5 58 IPR018848 -
Trre2g03710 690 CDD SET_SETDB-like 378 646 - -
Trre2g03710 690 FunFam SET-domain containing protein lysine methyltransferase family protein 357 671 - -
Trre2g03710 690 SUPERFAMILY SET domain 364 669 IPR046341 -
Trre2g03710 690 Gene3D SET domain 357 671 IPR046341 -
Trre2g03710 690 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 676 - -
Trre2g03710 690 SMART set_7 512 652 IPR001214 GO:0005515
Trre2g03710 690 ProSiteProfiles Pre-SET domain profile. 410 509 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre2g03710 690 MobiDBLite consensus disorder prediction 58 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03710 Trre-Chr2 41768909 41776037 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03710 488 669 C2H2 Transcription Factor Family AT2G23740 40.957 4.85e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre2g03710 Pre-SET 3.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03710 - - gsj:114402909 993.03