Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03709 ATGCCTCATCCAAGGGTTATTAAGGCCTTTGATGCTATGGAGGCCTTAGGAATCTCTAAGAAAGAGGTGAAACCAGTGTTGAAAAATTTGTTTAAACTGTATGATAACAAATGGGAGCTTATTGAAGACGACAACTATCGGGCACTTATAGATGCATACTTTGAGTCAAAGGAAGATAAGCAAGAAGAACATAAGAGAAAAGCTCCAATAAGTTGTCATGATGGTGAAAGACCAAAACAGAAACGTCACTTGGATACAGACAACCAGATTTCATCAGCTGACAACTCAAGACATGTGTTATCTGTAGAAGAGGCTGGCATACCTCCAAAGACTTTTAAACAGGAAACCATGATACCATCACAAACTTCCAGGCAAGATAAGAAGTCTGCAACCAGTTCACATGAATTTCAGAGAAGGTTGAGTGACGATAAAAGGACCTCAAGTTTTCACATGACTGCTAGAGATATAAAAAGTTATCCTGGGACATCATCATCTGCAGGGCATCACGAAGACCAAATTGAAGACCAAATTGATGAACCTAGCAATCCTTGTATTCAGAGGAAAATTATGTCAAGTGATCACTATCAGAAGAATCTTATAACATCAGGAACTGAGAAACCTAAGTTTCATCATGGATCTGTTTCGACAAGTTACAATGGTTCACCTGATGCCTCAAATGGAAATCATTCTATCAAATCCCTCACAGAGGTGTATCAGAATACACACAAGATAGAAGATAAGCCAACATGCAATAATAACACCAGAACCAGTAAGGGTAATATTGATATTGCTTCTTCACCCTTGGGAGAAGTTAAAATTTCTTTAAATTGTGATGCTGCATTCGGACAACCAAATTTCCATATTCCTAATTTGGATGGTGTTATGAAATCTGTGGAGGAAAAATACCTGAGGACTTCCAAGACTGTTGAGCCCCAACTATCGGTGACGAAGCTATTAGACGATTTATGCAGAAGTTTTTTGAAGATGGGCATGAATTTGAATCGAAAGGGGTCAAAGCAAGCTCTTGCCGAGGATAAAAAGAAATCCTTTCGATATGTCGATGACATAACAAAAGGTTCAGAAAATGTTAAAATATCATTATTAGATGAAACTAACAGTGAGGATTTTCCAAAGTTTAATTACATTCCATGTAATCTAATGTATCAAAGTGCTAATGTCAACATTTCACTTGCTCGGATTGCGGATCAAGGTTGCTGTGCTGGTTGTTCAGGCGACTGCCTTTCCTTACCATTTCCTTGTGCATGCTCTCAAGACACTGGTGGGGAGTTTGCTTACTCTTCACAAGGTTTGTTGAAAGAAAAGTTTTTAAAAGATTGCATGTCTATGATAATGGAACCTCAAGATCATCATTATGTGTACTGTAATGAATGCCCAATTGAGAGGTCTAAGAATGAAACCAAACCCGAACCGTGCAAGGGACATCTGGTTAGGAAGTTTATAAAGGAGTGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGGGGTATAAGCCGTAAATTGCAGGTGTTCTTGACTGAAGAAGGAAAGGGCTGGGGCGTTAGACCACTAGAAGATTTGCCCAAGGGATCCTTTGTATGTGAATACGCTGGGGAAATTTTAACAAATACAGAATTGTATGATAGGATTGTACAAAGTACCGGCAATGAAAGGCATACATATCCTGTAACGCTTGATGCAGACTGGGGCTCAGAAGTGGGATTAAAGGATGAAGAGGCATTATGCTTGGATGCAACACATAATGGGAATGTTGCAAGATTCATCAATCATAGATGCCATGATGCAAATCTGATAGATATTCCTGTTGAAGTGGAGACACCTGACCGCCACTATTATCATCTTGCCCTGTTTACAAACAAAAATGTGAGTGCATACGAGGAGTTGACATGGGATTATGGTATTGACTTTGATGATCATAACCATCCTATTAAAGCATTCAAATGTTGTTGTGGAAGCGCTTTCTGCCGCGATAAGAAACAAACAGGAACTAGATTTACAAAGACTAAAAAACTCAAGCATACATATATAGAGTAG 2070 0.3918 MPHPRVIKAFDAMEALGISKKEVKPVLKNLFKLYDNKWELIEDDNYRALIDAYFESKEDKQEEHKRKAPISCHDGERPKQKRHLDTDNQISSADNSRHVLSVEEAGIPPKTFKQETMIPSQTSRQDKKSATSSHEFQRRLSDDKRTSSFHMTARDIKSYPGTSSSAGHHEDQIEDQIDEPSNPCIQRKIMSSDHYQKNLITSGTEKPKFHHGSVSTSYNGSPDASNGNHSIKSLTEVYQNTHKIEDKPTCNNNTRTSKGNIDIASSPLGEVKISLNCDAAFGQPNFHIPNLDGVMKSVEEKYLRTSKTVEPQLSVTKLLDDLCRSFLKMGMNLNRKGSKQALAEDKKKSFRYVDDITKGSENVKISLLDETNSEDFPKFNYIPCNLMYQSANVNISLARIADQGCCAGCSGDCLSLPFPCACSQDTGGEFAYSSQGLLKEKFLKDCMSMIMEPQDHHYVYCNECPIERSKNETKPEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGISRKLQVFLTEEGKGWGVRPLEDLPKGSFVCEYAGEILTNTELYDRIVQSTGNERHTYPVTLDADWGSEVGLKDEEALCLDATHNGNVARFINHRCHDANLIDIPVEVETPDRHYYHLALFTNKNVSAYEELTWDYGIDFDDHNHPIKAFKCCCGSAFCRDKKQTGTRFTKTKKLKHTYIE 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03709 689 SMART set_7 511 651 IPR001214 GO:0005515
Trre2g03709 689 MobiDBLite consensus disorder prediction 57 88 - -
Trre2g03709 689 Pfam SET domain 523 645 IPR001214 GO:0005515
Trre2g03709 689 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 683 IPR025776 -
Trre2g03709 689 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 675 - -
Trre2g03709 689 Gene3D - 1 59 IPR043017 -
Trre2g03709 689 CDD SET_SETDB-like 377 645 - -
Trre2g03709 689 FunFam SET-domain containing protein lysine methyltransferase family protein 356 670 - -
Trre2g03709 689 MobiDBLite consensus disorder prediction 128 151 - -
Trre2g03709 689 Pfam Pre-SET motif 356 503 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre2g03709 689 SMART preset_2 353 495 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre2g03709 689 Pfam Ubiquitin-binding WIYLD domain 5 58 IPR018848 -
Trre2g03709 689 Gene3D SET domain 356 670 IPR046341 -
Trre2g03709 689 ProSiteProfiles SET domain profile. 511 645 IPR001214 GO:0005515
Trre2g03709 689 ProSiteProfiles Pre-SET domain profile. 409 508 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre2g03709 689 MobiDBLite consensus disorder prediction 203 226 - -
Trre2g03709 689 MobiDBLite consensus disorder prediction 57 178 - -
Trre2g03709 689 SUPERFAMILY SET domain 363 668 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03709 Trre-Chr2 41768909 41776037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03709 487 668 C2H2 Transcription Factor Family AT2G23740 40.957 4.99e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre2g03709 Pre-SET 3.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03709 - - gsj:114402909 997.267