Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03705 ATGTCTTCATCTTATCCCTCGTCCTCGATGCAGGCTGCATCAATTAATTCCAACATCAGAAGTGTTGGACACATGTTTTCAACCTCTGCTGAACAACTACCTGATAACGTCCCTTTTGCCTCTGCTTCAGAAATACATTCTACGCCATTCCCTCAAGAAAGTGAGGTTCTTTCCTGGGGAACAGATCCGTTTGATGATATTCTTCAGTTTCCTGTTGATGTTCCCATCCAGAATGATCATGTGCAATACAGTGGTTCCGACGCCTTGGGTGGAAACGCCAAAACAACTGATTTCAAGGAGTGGGTTGATCAGTTAATGTCAGTTGATGAATCTCCTCAGCCTAATTGGAACGAACTTCTCGGTGATAACAATATAGCAGAACAGGATTCACAAATACAACCTTCTCTCTTGATGCAAGAGACCCAGATTTCACTGCAGCAGCATATACCATCTAAAGAAGTTAATAATCTTCCAAATTCTTCTGTGTCGACTACATCACAAATACAACCTTCTCTCTTGATGCAAGAGACCCAGGTTTCACTGCAGCAGCATATACCATCTAAAGAATTTAATGATCTTCCTAATTCTTCTGTGTCGACTACATCACAATCTAAGCCTAGAATGCGTTGGACTCCAGAACTTCACGAGGCCTTTGTGGAAGCAGTAAATCAGCTTGGTGGAAGTGAGAAGGCTACACCAAAGGGTGTCTTGAACTTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCATCTGCAGAAATATAGAACTGCCAGATACAAACCGGAACCATCAGAAGGAATTCAAGAGAAGAATTTGACTTCAATCGATGAAATGACGACTATAGACTTAAAAACACCTAAGGGAATTACTGAAGCATTGCGGTTGCAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAATTTACAGATTCAAATTGAGAACCAAGGGAAGCGTCTACAAATGATGTTTGAGCAACAGATCAAGTCAGATGAGCCTTCTGCTCCACAATCAAGCGTAGTGGCACCTCCACCAGTTGAAAATTTGGAGAACAAAAATGAAGGTCATGAAAACCTTGGAACCAATGGTAGCACTCCAAACAAAAAGCCTGAAGAAAGTTCCCATGATACAAGCAAAAAGCAAAAGGGCGATGATGCTAAAGTTACTGATGAACTTGAGATGGAAGAAGACCAATCTGTCGCACCACCCTCAAAACGAGCGAAGACTGACGAGTAA 1257 0.42 MSSSYPSSSMQAASINSNIRSVGHMFSTSAEQLPDNVPFASASEIHSTPFPQESEVLSWGTDPFDDILQFPVDVPIQNDHVQYSGSDALGGNAKTTDFKEWVDQLMSVDESPQPNWNELLGDNNIAEQDSQIQPSLLMQETQISLQQHIPSKEVNNLPNSSVSTTSQIQPSLLMQETQVSLQQHIPSKEFNDLPNSSVSTTSQSKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPEPSEGIQEKNLTSIDEMTTIDLKTPKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKRLQMMFEQQIKSDEPSAPQSSVVAPPPVENLENKNEGHENLGTNGSTPNKKPEESSHDTSKKQKGDDAKVTDELEMEEDQSVAPPSKRAKTDE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03705 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
Trre2g03705 418 MobiDBLite consensus disorder prediction 188 208 - -
Trre2g03705 418 MobiDBLite consensus disorder prediction 335 418 - -
Trre2g03705 418 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 259 IPR006447 GO:0003677
Trre2g03705 418 SUPERFAMILY Homeodomain-like 203 259 IPR009057 -
Trre2g03705 418 MobiDBLite consensus disorder prediction 376 396 - -
Trre2g03705 418 Coils Coil 293 313 - -
Trre2g03705 418 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Trre2g03705 418 FunFam Myb family transcription factor 204 262 - -
Trre2g03705 418 Pfam MYB-CC type transfactor, LHEQLE motif 292 336 IPR025756 -
Trre2g03705 418 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 182 394 IPR044848 GO:0003700
Trre2g03705 418 Gene3D - 204 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03705 Trre-Chr2 41594129 41597358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03705 51 352 G2-like Transcription Factor Family AT3G04450 44.586 1.23e-72 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre2g03705 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03705 - - psat:127093006 552.362