Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g03705 | ATGTCTTCATCTTATCCCTCGTCCTCGATGCAGGCTGCATCAATTAATTCCAACATCAGAAGTGTTGGACACATGTTTTCAACCTCTGCTGAACAACTACCTGATAACGTCCCTTTTGCCTCTGCTTCAGAAATACATTCTACGCCATTCCCTCAAGAAAGTGAGGTTCTTTCCTGGGGAACAGATCCGTTTGATGATATTCTTCAGTTTCCTGTTGATGTTCCCATCCAGAATGATCATGTGCAATACAGTGGTTCCGACGCCTTGGGTGGAAACGCCAAAACAACTGATTTCAAGGAGTGGGTTGATCAGTTAATGTCAGTTGATGAATCTCCTCAGCCTAATTGGAACGAACTTCTCGGTGATAACAATATAGCAGAACAGGATTCACAAATACAACCTTCTCTCTTGATGCAAGAGACCCAGATTTCACTGCAGCAGCATATACCATCTAAAGAAGTTAATAATCTTCCAAATTCTTCTGTGTCGACTACATCACAAATACAACCTTCTCTCTTGATGCAAGAGACCCAGGTTTCACTGCAGCAGCATATACCATCTAAAGAATTTAATGATCTTCCTAATTCTTCTGTGTCGACTACATCACAATCTAAGCCTAGAATGCGTTGGACTCCAGAACTTCACGAGGCCTTTGTGGAAGCAGTAAATCAGCTTGGTGGAAGTGAGAAGGCTACACCAAAGGGTGTCTTGAACTTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCATCTGCAGAAATATAGAACTGCCAGATACAAACCGGAACCATCAGAAGGAATTCAAGAGAAGAATTTGACTTCAATCGATGAAATGACGACTATAGACTTAAAAACACCTAAGGGAATTACTGAAGCATTGCGGTTGCAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAATTTACAGATTCAAATTGAGAACCAAGGGAAGCGTCTACAAATGATGTTTGAGCAACAGATCAAGTCAGATGAGCCTTCTGCTCCACAATCAAGCGTAGTGGCACCTCCACCAGTTGAAAATTTGGAGAACAAAAATGAAGGTCATGAAAACCTTGGAACCAATGGTAGCACTCCAAACAAAAAGCCTGAAGAAAGTTCCCATGATACAAGCAAAAAGCAAAAGGGCGATGATGCTAAAGTTACTGATGAACTTGAGATGGAAGAAGACCAATCTGTCGCACCACCCTCAAAACGAGCGAAGACTGACGAGTAA | 1257 | 0.42 | MSSSYPSSSMQAASINSNIRSVGHMFSTSAEQLPDNVPFASASEIHSTPFPQESEVLSWGTDPFDDILQFPVDVPIQNDHVQYSGSDALGGNAKTTDFKEWVDQLMSVDESPQPNWNELLGDNNIAEQDSQIQPSLLMQETQISLQQHIPSKEVNNLPNSSVSTTSQIQPSLLMQETQVSLQQHIPSKEFNDLPNSSVSTTSQSKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPEPSEGIQEKNLTSIDEMTTIDLKTPKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKRLQMMFEQQIKSDEPSAPQSSVVAPPPVENLENKNEGHENLGTNGSTPNKKPEESSHDTSKKQKGDDAKVTDELEMEEDQSVAPPSKRAKTDE | 418 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g03705 | 418 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 202 | 262 | IPR017930 | - | |
Trre2g03705 | 418 | MobiDBLite | consensus disorder prediction | 188 | 208 | - | - | |
Trre2g03705 | 418 | MobiDBLite | consensus disorder prediction | 335 | 418 | - | - | |
Trre2g03705 | 418 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 205 | 259 | IPR006447 | GO:0003677 | |
Trre2g03705 | 418 | SUPERFAMILY | Homeodomain-like | 203 | 259 | IPR009057 | - | |
Trre2g03705 | 418 | MobiDBLite | consensus disorder prediction | 376 | 396 | - | - | |
Trre2g03705 | 418 | Coils | Coil | 293 | 313 | - | - | |
Trre2g03705 | 418 | Pfam | Myb-like DNA-binding domain | 207 | 258 | IPR001005 | - | |
Trre2g03705 | 418 | FunFam | Myb family transcription factor | 204 | 262 | - | - | |
Trre2g03705 | 418 | Pfam | MYB-CC type transfactor, LHEQLE motif | 292 | 336 | IPR025756 | - | |
Trre2g03705 | 418 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 182 | 394 | IPR044848 | GO:0003700 | |
Trre2g03705 | 418 | Gene3D | - | 204 | 263 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g03705 | Trre-Chr2 | 41594129 | 41597358 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g03705 | 51 | 352 | G2-like Transcription Factor Family | AT3G04450 | 44.586 | 1.23e-72 | 231 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-G2-like | Trre2g03705 | Myb_DNA-binding | 1.3e-08 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g03705 | - | - | psat:127093006 | 552.362 |