Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03664 ATGACGACACCACCTTCTTCATCATCTTCTCAATCTCAATTTGTGTATTCCAACGCCCCTTACTTCCCCGTTCCCTTTCATCTTCAACAACCCGCAACCACCACTCACTACGCCGCACCGTACGTTGCCACCCCTGCCGTTCAACTTCCTCCGCCACCAGTCGTCGGTCCCGTTCCACCTCCGGCTGCTTACTCGGTGCCGCAATATCAGGCACAACAGTTATTTGAGAGGGATGCACAGATAATTACGCCGGAGGCTCTTGAGAATGTGAAGGCTGCGATTGCGAGCAGCGACGTTGAGCATAAAGCTGAAACGAAAAAGAAAGCGGTTCCTCGTAAAGCTGCTGGTCAATCTTGGGAGGATCCTATACTTGCAGAGTGGCCTGAAGATGATTATCGGCTCTTCTGCGGTGATCTTGGTAATGAAGTCAATGACGATGTTCTTTCAAAAGCATTCACAAGATTCCCTTCCTTTAACATGGCACGAGTTGTTAGAGATAAGCGAACTGGAAAAACAAAGGGTTATGGGTTTATAAGCTTTGCCAACCCTGCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTCAGTAG 591 0.4856 MTTPPSSSSSQSQFVYSNAPYFPVPFHLQQPATTTHYAAPYVATPAVQLPPPPVVGPVPPPAAYSVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKAETKKKAVPRKAAGQSWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAALKEMNGQ 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03664 196 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 63 196 - -
Trre2g03664 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 196 IPR000504 GO:0003723
Trre2g03664 196 Gene3D - 71 196 IPR012677 -
Trre2g03664 196 SUPERFAMILY RNA-binding domain, RBD 115 196 IPR035979 GO:0003676
Trre2g03664 196 SMART rrm1_1 133 196 IPR000504 GO:0003723
Trre2g03664 196 FunFam RNA-binding protein 42 67 196 - -
Trre2g03664 196 CDD RRM_RBM42 126 195 IPR034215 -
Trre2g03664 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 196 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03664 Trre-Chr2 36515464 36519607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03664 81 196 Eukaryotic Initiation Factors Gene Family AT1G71770 23.967 2.93e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03664 K25079 - gmx:100807693 292.352