Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03643 ATGGCGAACCGGTGGTGGACCGGACCGGTAGGTCTAGGTGGGATGGACAACTCAGTAACTTCTTCTCCACTTCAAAAACCAGATCTGGGTTTCTCCATGAATGGAAGTGCCATTACAGGAGGATTAAACAACATTAACAACAACAACAACAATAACGAAGATCAAGATGAGAAAGAAAACAGCGACGAACAAAAAGGAGGAGCAATAGAAACAAACACCTCCACGCGCCGTCCAAGAGGAAGACCATCGGGATCAAAAAACAAACCAAAACCACCAATATTCATAACAAGAGATAGCCCTAATGCACTTCGAAGTCATGTGATGGAAGTAGCAACAGGAACAGACATATCAGATTGTGTTATTCAGTTTGCTAGAAAAAGACAGAGAGGTATTTGCATTCTAAGCGCAAGTGGAACCGTCGTTAACGTTTCTCTCCGACAACCAACAGGTCCCGGAGCTGTGGTGGCTCTTCCTGGTAGATTTGATATTCTGTCGTTAACTGGTTCTGTTCTTCCTGGACCTTCACCTCCTGGTGCTACTGGTTTGACTATTTATCTTTCTGGAGGTCAAGGACAGGTGGTTGGCGGTGGTGTTGTTGGTCCACTTGTGGCGGCTGGACCGGTTATGTTGATGGCGGCGACTTTTTCAAATGCGACTTATGAGAGGTTGCCTGTTGAAGATGGTGATGATCAGGAGCAGGGACATGGTGGTGGTGGTGGTGATGAGTCTCCGACTGCGGCGGGGATGGGACAGTTACCGGGTGGATCTGTCGGAGAAGGTTCGTCGTCGATACCGAACACCATACTAATTAACAAAGTTGACTTGGATTCAGCTAGCTACTATACTAGCAATTCCTGGGATAGTGAGGACTTGAGATTTCTTGAGGAATCTCTTGGTTCATTTGCGGACGACCAGCTAACTCAAGTGATGTCGTTGCAACGTCCATCATCTGGTTTGCAGAGACGATAG 969 0.4696 MANRWWTGPVGLGGMDNSVTSSPLQKPDLGFSMNGSAITGGLNNINNNNNNNEDQDEKENSDEQKGGAIETNTSTRRPRGRPSGSKNKPKPPIFITRDSPNALRSHVMEVATGTDISDCVIQFARKRQRGICILSASGTVVNVSLRQPTGPGAVVALPGRFDILSLTGSVLPGPSPPGATGLTIYLSGGQGQVVGGGVVGPLVAAGPVMLMAATFSNATYERLPVEDGDDQEQGHGGGGGDESPTAAGMGQLPGGSVGEGSSSIPNTILINKVDLDSASYYTSNSWDSEDLRFLEESLGSFADDQLTQVMSLQRPSSGLQRR 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03643 322 MobiDBLite consensus disorder prediction 1 100 - -
Trre2g03643 322 ProSiteProfiles PPC domain profile profile. 100 235 IPR005175 -
Trre2g03643 322 FunFam AT-hook motif nuclear-localized protein 103 231 - -
Trre2g03643 322 Gene3D - 103 232 - -
Trre2g03643 322 MobiDBLite consensus disorder prediction 36 51 - -
Trre2g03643 322 CDD DUF296 104 187 IPR005175 -
Trre2g03643 322 MobiDBLite consensus disorder prediction 226 260 - -
Trre2g03643 322 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 47 245 IPR014476 GO:0003680
Trre2g03643 322 MobiDBLite consensus disorder prediction 66 80 - -
Trre2g03643 322 SUPERFAMILY AF0104/ALDC/Ptd012-like 100 228 - -
Trre2g03643 322 Pfam Plants and Prokaryotes Conserved (PCC) domain 104 217 IPR005175 -
Trre2g03643 322 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03643 Trre-Chr2 36041104 36043492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03643 1 225 AT-hook Motif Nuclear Localized (AHL) Family AT3G04570 60.656 2.57e-79 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03643 - - qsu:112038015 317.775