Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03640 ATGGAAGACTCCAACAACAACAACCAAGTGACCTCATTGTTCGAACATCACAACTTAAACACCGTCACCGTTAATCTCTCTCCAGTTAACGGTTCCGTTGATGGGACCCACACCGACCTTCATCATTCCGTTACGGAGAACAAGAAGAAACGTGGTAGGCCGAGAAAGTATGAGTCTCCTGAAGAAGCTCTCGCCGGTAGAAAAGCTATCGCCGCTAGAAAAGCCGCCGCCGCCGCTGCTGCTGCTGCTTCCGCTACGACGTCGTTTTCGTCTTCTAATCATAATAAGCCGAAAAAGTTTCATTCGTCTTCTCTAGGTAATTCTAGAGAGGGATTTAATCTTCACATTGTTGCTGTTCCTGCTGGTGAGGATATTGGCCAACATATTATGTCGCTCATGCAAAAACATAGTAGGTGTGAGATGTGCATTCTGTCCGGATCTGGTTCCATCGCTAGTGCCACTCTTCGTCAGCCAGCAACCTCTGGAGGCAATATTACATATGAGGGTCGCTTTGACATTATTTCACTTACTGGATCCTATGTCCATAATGAATTTGATGGTCGTTCTGGTGGTCTCAGTGTATGCTTATCTCATTCTGATGGGCAACTTGTAGGTGGAAGCATTGCTGGACCCCTTAAAGCTGCTGGTCCAGTTCAGGTCATTGTTGGCACATTTTCTATCAACACTACTGCTGGTATAAAAGGTGATATTTCTACCAGCAAAATATCATCACCAGTTGCTGAACCAGCATCAAATTTAGGCTTCCGCCCAGCAGTTAACTCTTCCAATGGGAATACAATCCCGGTAAACAAGGAGCATCAAGCCATTGGGGGAAGTCATTTCATGCATCAACAATATGGTGTAAATGTGGTACCTTTCCATCCCTCAGACTGGGGAAGTAGTCCGGATTCAAGAAATGCTGGCTTTGAACTGATAGGAAGAACAGGTCACGGCGAACATCAGTCTCCTGAGAACGGGGACTATTCCTAA 990 0.4586 MEDSNNNNQVTSLFEHHNLNTVTVNLSPVNGSVDGTHTDLHHSVTENKKKRGRPRKYESPEEALAGRKAIAARKAAAAAAAAASATTSFSSSNHNKPKKFHSSSLGNSREGFNLHIVAVPAGEDIGQHIMSLMQKHSRCEMCILSGSGSIASATLRQPATSGGNITYEGRFDIISLTGSYVHNEFDGRSGGLSVCLSHSDGQLVGGSIAGPLKAAGPVQVIVGTFSINTTAGIKGDISTSKISSPVAEPASNLGFRPAVNSSNGNTIPVNKEHQAIGGSHFMHQQYGVNVVPFHPSDWGSSPDSRNAGFELIGRTGHGEHQSPENGDYS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03640 329 MobiDBLite consensus disorder prediction 85 106 - -
Trre2g03640 329 Pfam Plants and Prokaryotes Conserved (PCC) domain 115 226 IPR005175 -
Trre2g03640 329 ProSiteProfiles PPC domain profile profile. 108 250 IPR005175 -
Trre2g03640 329 Gene3D - 113 240 - -
Trre2g03640 329 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 252 IPR039605 GO:0003680
Trre2g03640 329 MobiDBLite consensus disorder prediction 297 329 - -
Trre2g03640 329 CDD DUF296 113 225 IPR005175 -
Trre2g03640 329 MobiDBLite consensus disorder prediction 39 62 - -
Trre2g03640 329 SUPERFAMILY AF0104/ALDC/Ptd012-like 111 226 - -
Trre2g03640 329 MobiDBLite consensus disorder prediction 30 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03640 Trre-Chr2 35979184 35984691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03640 48 328 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 42.122 5.89e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03640 - - gmx:100809675 340.117