Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03619 ATGGCCAACAATGAAGAACAAACATATGCATTGAAGGATAAGTTGAAGGAACTTGTTAATACTATTGTGGAAAGTGATGATTACACTGTACATGCTGCTGATGAAGCTATCACTGCTCTTTCTGTTCTCAGAGATATGAAATGCAGTGCTTCTTTCTCGCGTAAATTGGATCGTTTATCTGTTTCTGTTCCTCAACAGTTTCGATGTCCCATCTCAGGTCATATTATGACTGATCCTGTTATTTTGGCCAATGGACAGACTTATGATCGACCGTTCATCCAAAAGTGGCTGAATGAAATCCACAAAACTTGCCCTCAAACTCAGGATGTCCTCTCTCACTCCATCCTTTCTCCTAATTATTTGGTCCATGACATGATTTCAAGGTGGTGTAAGGAGCATGGAATTGAGCTACCAATGCCTATTGGGGACATAGACAATGGTGAAGTAAACGAAGCGCACAAATTCCGTTTACGTTCGTTACTTCACAAACTGTCATTATCTATGCTGGACCAAAAAGAAGCTGCAAGAGAGCTTCGCCTGTTATCGAAGCGAATGCCTTCGTTTCGAACACTCTTTGGTGACTCAGAAGTGATTCAGAAATTACTCACTCCATTTTCACCTGGCATGGCTTGTATTGATCCAGAACTCCAAGAGGATTTGATCACAGCTGTTCTAAATCTCTCAATCGACGAAAAAAATAAGAGAGTTTTCGCAGAGGATGAAAAGCTTATCGCCTTTGTTATCGATTCGTTGAAATCAGGAACCATTCAAACCAGAAGCAATGCTGCAGCAGCTATTTTGTCATTATCAGCACTTGATATAAACAAACACATCATTGGAAAAACTGGTGCTGTTAAATATTTGGTTGATCTTTTAGAAAATGGACATCCATCAGCAATGAAAGATGCTGCTTCGGCTATATTCAATCTATGTATTGCACATGAAAATAAAGCGAGGACTGTTCGAGAAGGCGCAGTTCAGGTTATTCTCAGCAAGATCATCGTGGACCATGTTCTAGTTGACGAGCTTTTGGCCTTATTGGCACTTCTCTCGAGCCATTCCAAGGCTGTTGAGGCATTGGGAAGTCACGGCGCTGTCCCTTTCTTAATGGATATTTTAAGGGACAACAGTGTTTCGGATCGGAGCAAGGAGAACTGTGTTGCAATCTTGTACATAATATTTTTCAACGATAAAACAAAGAGGAAGGAAATTAGAGATGATGAAATAGCCAATGGTACACTGTCTAGGCTTGCACAATGTGGAACTTCAAGAGCTAAGAGGAAAGCTTGCGGTATTCTCGATAGGCTCAAGATAGCTCAATCCCCTCGAACCACAACTCTTGAGGGTCTATTTGGTGTCAACTTTAAACAACTATGA 1377 0.4096 MANNEEQTYALKDKLKELVNTIVESDDYTVHAADEAITALSVLRDMKCSASFSRKLDRLSVSVPQQFRCPISGHIMTDPVILANGQTYDRPFIQKWLNEIHKTCPQTQDVLSHSILSPNYLVHDMISRWCKEHGIELPMPIGDIDNGEVNEAHKFRLRSLLHKLSLSMLDQKEAARELRLLSKRMPSFRTLFGDSEVIQKLLTPFSPGMACIDPELQEDLITAVLNLSIDEKNKRVFAEDEKLIAFVIDSLKSGTIQTRSNAAAAILSLSALDINKHIIGKTGAVKYLVDLLENGHPSAMKDAASAIFNLCIAHENKARTVREGAVQVILSKIIVDHVLVDELLALLALLSSHSKAVEALGSHGAVPFLMDILRDNSVSDRSKENCVAILYIIFFNDKTKRKEIRDDEIANGTLSRLAQCGTSRAKRKACGILDRLKIAQSPRTTTLEGLFGVNFKQL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03619 458 CDD RING-Ubox_PUB 64 116 IPR045210 -
Trre2g03619 458 SMART arm_5 272 312 IPR000225 GO:0005515
Trre2g03619 458 SMART arm_5 353 395 IPR000225 GO:0005515
Trre2g03619 458 PANTHER U BOX DOMAIN-CONTAINING 17 435 - -
Trre2g03619 458 Gene3D - 167 446 IPR011989 -
Trre2g03619 458 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Trre2g03619 458 SUPERFAMILY RING/U-box 51 137 - -
Trre2g03619 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 325 IPR000225 GO:0005515
Trre2g03619 458 SUPERFAMILY ARM repeat 169 436 IPR016024 -
Trre2g03619 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 136 IPR013083 -
Trre2g03619 458 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Trre2g03619 458 Pfam U-box domain 63 133 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03619 Trre-Chr2 35600804 35602913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03619 125 441 U-box Gene Family AT3G07360 51.084 2.79e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03619 - - gmx:100806132 538.88