Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03577 ATGGGTTCGGTCAACAAACACTGGCCTAGCATGTTTAAGAGGTCAGATTATGAGAATTCACAACATGGCATCAACTCCTTCACTGGTGGTCATGATGATGAGAGAGCTTCACAACCACCAAAGCCAAGATGGATTCCAAGACAAGAGCAAATCCAAATTTTGGAAGATATTTTCAACTCAGGAATGATGAATCCTCCAAGGGAAGAAATTAAGAAAATTCGTGAACGGTTACAAGAATATGGCCCAGTTGGTGAAATAAATGTTTTCTATTGGTTCCAAAACCGCAAAGCAAGGATAAATAAACAAACACAGCCCAACAATATTCCAAGAAAAAGAAAAAGCAAAAACTCTGCAGCTCAAACCATCACAATACCTTATAATTCATTCTCATCATCTTCCTCTTATTATCAAAATGCATCTCCCAATGAAATAGTGGTACCTAATAATGTTGAATTCCCTACTAATAACGGGGTGGTTAATTTGACTAATGATTCCCCTAATGATACAATCTTTGGGAACCAAAACCTAGCTACTGATTATTTTCACACTCCCATTCAAACTGATTTTCAACTGCCTACACCCCCTTTGTTCTCTTTCCCTAGCCAGTTCCCTAATATGACTCAGCAGTTGCCTCAAAATGAGATCTTGATGAACTGTGCAAGTGGAATTCCAATGAATGACCTGTATGATCAAGGGAATATCCAAGATCTGGAGGTTGCTATAAATATGATGCAGCAACAGCAGCAACAACAACAACAAGAAGATCCACAACTAATCAGTTCGGGTGTGATTTCGAATTCACTTGATGATGGTTCAGATCTTCCTCCTTTTCCTCCTATTATTATTGATGCACCCGTTGTTGATCCGTTCTCCATCACTCAGTTTCAAGGTGTTGGTGAGCCGAATCATTTTACGGCGGCAAAATGTACTGTAAGTATTGACGACCAGATAATTGAGGTTGATTCGGGGCCCTTTAACATCCGTCAAATTTTTGGGGATGAAGCTATTCTCGTTGACTCCTCTGGCCAGCTTGTTCTCACTGACGAGTGGGGTGTAACCCTTGATTCACTCCAACATGGTGCTTCGTATTTTCTGGTATGCATATTATCTTATAGTAACTACTTTGTTAATTACATTTTCCTATACTAA 1149 0.3943 MGSVNKHWPSMFKRSDYENSQHGINSFTGGHDDERASQPPKPRWIPRQEQIQILEDIFNSGMMNPPREEIKKIRERLQEYGPVGEINVFYWFQNRKARINKQTQPNNIPRKRKSKNSAAQTITIPYNSFSSSSSYYQNASPNEIVVPNNVEFPTNNGVVNLTNDSPNDTIFGNQNLATDYFHTPIQTDFQLPTPPLFSFPSQFPNMTQQLPQNEILMNCASGIPMNDLYDQGNIQDLEVAINMMQQQQQQQQQEDPQLISSGVISNSLDDGSDLPPFPPIIIDAPVVDPFSITQFQGVGEPNHFTAAKCTVSIDDQIIEVDSGPFNIRQIFGDEAILVDSSGQLVLTDEWGVTLDSLQHGASYFLVCILSYSNYFVNYIFLY 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03577 382 ProSiteProfiles 'Homeobox' domain profile. 37 102 IPR001356 GO:0003677
Trre2g03577 382 SMART HOX_1 39 106 IPR001356 GO:0003677
Trre2g03577 382 CDD homeodomain 40 102 IPR001356 GO:0003677
Trre2g03577 382 Gene3D - 28 120 - -
Trre2g03577 382 Coils Coil 234 254 - -
Trre2g03577 382 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 366 IPR044557 GO:0003700|GO:0050793
Trre2g03577 382 MobiDBLite consensus disorder prediction 1 45 - -
Trre2g03577 382 Pfam Homeodomain 41 98 IPR001356 GO:0003677
Trre2g03577 382 SUPERFAMILY Homeodomain-like 37 104 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03577 Trre-Chr2 34746875 34749069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03577 1 98 Wox Gene Family AT2G33880 57.658 1.64e-33 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre2g03577 Homeodomain 5.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03577 - - tpra:123914706 481.87