Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03570 ATGGAATTTCAATCCATAATTCCGGTATCTCAAGGTTCAATGTGGATGATGAAATTGGGGCCAAGTGAAACAATGGATTCTGAATCTTATCCACAACGTCCAGGTGAATCAGATTGTTCATATTACATAAAAACTGGCCTTTGTAGATTCGGTGTCACGTGTCGATTTAACCATCCTCCTAGCAGAAAACTGGCTATTGTATCTGCAAGAACGATTGGCGAGTTCCCGGAAAGAATAGGGCAACCAGAATGTCAGTACTATATGAAGACAGGAACTTGCAAATTTGGAGTCACATGCAAATTTCATCATCCTAGAGACCAAGCTGAGATTTCTGGAAGAGTTGCCTTAAACACTTTAGGCTATCCACTTCGCCCCAATGAGGCTGAATGCAGCTATTATTTGAGAACAGGAGAATGCAAATTTGGTAACAATTGTAAATTCCATCATCCTCAACCAAATAATATGATGCTTTCATTAAGGAGTTCTCCCATTTACCCTACCCTTCATTCTCCAAATCCATCCTATGTTCCTTCAAGTTATACACCTTTGATTATGCCTGGATGGAGTGCATACAATGGTCAAATGGGATCAATGATCTCTACAGCTCCAGCCAGTCCATTGCAGAGGGAGAACATATTTCCAGAGAGACCTGGTCAGCCCGAATGCAAATTCTACATGAAAACGGGAGATTGTAAGTTTGGTGCAATCTGTCGGTTCAACCACCCGCGTCAAAGACTAATTCCTGCTTCTCCTGACTGTCTCTTGAGTCCCATGGGCCTTCCTTTACGTCCTGGAGAACCTATGTGTGTATTCTATTCGCGCTACGGCATATGTAAATTTGGACCAAGTTGCAAGTTTAACCATCCAATGGGAATTTTCAGCTATGATGTATCTGCATCTCCTTCCGTTAACGCCACTGACAGGCGTCTATTAGGACCTTCATCGGCAACTGCAGCTACATTACTTGAAGAGTCAAGCTCATCAAAACCGAGGAGGCTTTCCATATCAGAGACAAGACAAGTTCCTTCTGATGATGATGACGACGACATTGATGAAGATAGATGA 1065 0.4254 MEFQSIIPVSQGSMWMMKLGPSETMDSESYPQRPGESDCSYYIKTGLCRFGVTCRFNHPPSRKLAIVSARTIGEFPERIGQPECQYYMKTGTCKFGVTCKFHHPRDQAEISGRVALNTLGYPLRPNEAECSYYLRTGECKFGNNCKFHHPQPNNMMLSLRSSPIYPTLHSPNPSYVPSSYTPLIMPGWSAYNGQMGSMISTAPASPLQRENIFPERPGQPECKFYMKTGDCKFGAICRFNHPRQRLIPASPDCLLSPMGLPLRPGEPMCVFYSRYGICKFGPSCKFNHPMGIFSYDVSASPSVNATDRRLLGPSSATAATLLEESSSSKPRRLSISETRQVPSDDDDDDIDEDR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03570 354 ProSiteProfiles Zinc finger C3H1-type profile. 78 106 IPR000571 GO:0046872
Trre2g03570 354 SMART c3hfinal6 124 151 IPR000571 GO:0046872
Trre2g03570 354 SMART c3hfinal6 263 290 IPR000571 GO:0046872
Trre2g03570 354 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Trre2g03570 354 SMART c3hfinal6 78 105 IPR000571 GO:0046872
Trre2g03570 354 SMART c3hfinal6 216 243 IPR000571 GO:0046872
Trre2g03570 354 SUPERFAMILY CCCH zinc finger 220 245 IPR036855 GO:0046872
Trre2g03570 354 ProSiteProfiles Zinc finger C3H1-type profile. 124 152 IPR000571 GO:0046872
Trre2g03570 354 SUPERFAMILY CCCH zinc finger 82 107 IPR036855 GO:0046872
Trre2g03570 354 ProSiteProfiles Zinc finger C3H1-type profile. 263 291 IPR000571 GO:0046872
Trre2g03570 354 MobiDBLite consensus disorder prediction 319 337 - -
Trre2g03570 354 Gene3D - 124 180 - -
Trre2g03570 354 MobiDBLite consensus disorder prediction 319 354 - -
Trre2g03570 354 PANTHER PROTEIN PHOSPHATASE RELATED 22 313 - -
Trre2g03570 354 ProSiteProfiles Zinc finger C3H1-type profile. 216 244 IPR000571 GO:0046872
Trre2g03570 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 105 IPR000571 GO:0046872
Trre2g03570 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 35 60 IPR000571 GO:0046872
Trre2g03570 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 218 243 IPR000571 GO:0046872
Trre2g03570 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 290 IPR000571 GO:0046872
Trre2g03570 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 151 IPR000571 GO:0046872
Trre2g03570 354 SUPERFAMILY CCCH zinc finger 266 290 IPR036855 GO:0046872
Trre2g03570 354 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Trre2g03570 354 SUPERFAMILY CCCH zinc finger 36 61 IPR036855 GO:0046872
Trre2g03570 354 Gene3D - 32 114 - -
Trre2g03570 354 Gene3D - 214 294 - -
Trre2g03570 354 SUPERFAMILY CCCH zinc finger 126 152 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03570 Trre-Chr2 34592903 34595510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03570 14 353 C2H2 Transcription Factor Family AT3G02830 53.708 1.82e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre2g03570 zf-CCCH 1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03570 - - gmx:100802536 530.406